Triple

T5931435
Position Surface form Disambiguated ID Type / Status
Subject Saccharomyces cerevisiae E131946 entity
Predicate cellCycleControlProtein P11988 FINISHED
Object Cdc28
Cdc28 is the major cyclin-dependent kinase in budding yeast that drives progression through the cell cycle by phosphorylating key regulatory proteins.
E556655 NE FINISHED

How this triple was built (5 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Cdc28 | Statement: [Saccharomyces cerevisiae, cellCycleControlProtein, Cdc28]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: Cdc28
Context triple: [Saccharomyces cerevisiae, cellCycleControlProtein, Cdc28]
  • A. ERK
    ERK is the abbreviation for the Evangelical Reformed Church, a Protestant regional church within the Reformed tradition.
  • B. PKC
    PKC is a leading international cryptography conference focused on public-key cryptography research and advancements.
  • C. RAPC
    RAPC is the abbreviation for the Royal Army Pay Corps, a former British Army administrative corps responsible for managing soldiers’ pay and financial services.
  • D. DPPA
    DPPA is the United Nations department responsible for conflict prevention, peacemaking, and supporting political and peacebuilding efforts worldwide.
  • E. CNK4
    CNK4 is the ICAO airport code assigned to Parry Sound Area Municipal Airport in Ontario, Canada.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Cdc28
Triple: [Saccharomyces cerevisiae, cellCycleControlProtein, Cdc28]
Generated description
Cdc28 is the major cyclin-dependent kinase in budding yeast that drives progression through the cell cycle by phosphorylating key regulatory proteins.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: Cdc28
Target entity description: Cdc28 is the major cyclin-dependent kinase in budding yeast that drives progression through the cell cycle by phosphorylating key regulatory proteins.
  • A. ERK
    ERK is the abbreviation for the Evangelical Reformed Church, a Protestant regional church within the Reformed tradition.
  • B. PKC
    PKC is a leading international cryptography conference focused on public-key cryptography research and advancements.
  • C. RAPC
    RAPC is the abbreviation for the Royal Army Pay Corps, a former British Army administrative corps responsible for managing soldiers’ pay and financial services.
  • D. DPPA
    DPPA is the United Nations department responsible for conflict prevention, peacemaking, and supporting political and peacebuilding efforts worldwide.
  • E. CNK4
    CNK4 is the ICAO airport code assigned to Parry Sound Area Municipal Airport in Ontario, Canada.
  • F. None of above. chosen
PD Predicate disambiguation gpt-5-mini-2025-08-07
Target predicate: cellCycleControlProtein
Context triple: [Saccharomyces cerevisiae, cellCycleControlProtein, Cdc28]
  • A. cellDivisionMachinery chosen
    Indicates the cellular components and processes that carry out and regulate the physical division of a cell into two daughter cells.
  • B. cellStates
    Indicates the various conditions or phases that a cell can be in at a given time.
  • C. cellType
    Indicates the classification relationship that specifies what type of cell an entity is or is associated with.
  • D. cellularOrganization
    Indicates how the components within a biological cell are structured, arranged, and functionally organized in relation to one another.
  • E. geneticMaterialOrganization
    Indicates how genetic material is structured, arranged, or organized within or among biological entities.
  • F. None of above.

Provenance (6 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69c0085b75e88190a632f9691f9da48b completed March 22, 2026, 3:18 p.m.
NER Named-entity recognition batch_69c03c9239e08190bff7ef2bd6d21ae0 completed March 22, 2026, 7:01 p.m.
NED1 Entity disambiguation (via context triple) batch_69c0c05eb4b8819097f203e1db94ae8f completed March 23, 2026, 4:23 a.m.
NEDg Description generation batch_69c0c1dc210c8190b841e00b38577b08 completed March 23, 2026, 4:30 a.m.
NED2 Entity disambiguation (via description) batch_69c0c25267588190bee988b869f14382 completed March 23, 2026, 4:32 a.m.
PD Predicate disambiguation batch_69c033541d108190a34d1fde2fe9dacb completed March 22, 2026, 6:22 p.m.
Created at: March 22, 2026, 4 p.m.