Triple
T5931435
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Saccharomyces cerevisiae |
E131946
|
entity |
| Predicate | cellCycleControlProtein |
P11988
|
FINISHED |
| Object |
Cdc28
Cdc28 is the major cyclin-dependent kinase in budding yeast that drives progression through the cell cycle by phosphorylating key regulatory proteins.
|
E556655
|
NE FINISHED |
How this triple was built (5 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Cdc28 | Statement: [Saccharomyces cerevisiae, cellCycleControlProtein, Cdc28]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Cdc28 Context triple: [Saccharomyces cerevisiae, cellCycleControlProtein, Cdc28]
-
A.
ERK
ERK is the abbreviation for the Evangelical Reformed Church, a Protestant regional church within the Reformed tradition.
-
B.
PKC
PKC is a leading international cryptography conference focused on public-key cryptography research and advancements.
-
C.
RAPC
RAPC is the abbreviation for the Royal Army Pay Corps, a former British Army administrative corps responsible for managing soldiers’ pay and financial services.
-
D.
DPPA
DPPA is the United Nations department responsible for conflict prevention, peacemaking, and supporting political and peacebuilding efforts worldwide.
-
E.
CNK4
CNK4 is the ICAO airport code assigned to Parry Sound Area Municipal Airport in Ontario, Canada.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Cdc28 Triple: [Saccharomyces cerevisiae, cellCycleControlProtein, Cdc28]
Generated description
Cdc28 is the major cyclin-dependent kinase in budding yeast that drives progression through the cell cycle by phosphorylating key regulatory proteins.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Cdc28 Target entity description: Cdc28 is the major cyclin-dependent kinase in budding yeast that drives progression through the cell cycle by phosphorylating key regulatory proteins.
-
A.
ERK
ERK is the abbreviation for the Evangelical Reformed Church, a Protestant regional church within the Reformed tradition.
-
B.
PKC
PKC is a leading international cryptography conference focused on public-key cryptography research and advancements.
-
C.
RAPC
RAPC is the abbreviation for the Royal Army Pay Corps, a former British Army administrative corps responsible for managing soldiers’ pay and financial services.
-
D.
DPPA
DPPA is the United Nations department responsible for conflict prevention, peacemaking, and supporting political and peacebuilding efforts worldwide.
-
E.
CNK4
CNK4 is the ICAO airport code assigned to Parry Sound Area Municipal Airport in Ontario, Canada.
- F. None of above. chosen
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: cellCycleControlProtein Context triple: [Saccharomyces cerevisiae, cellCycleControlProtein, Cdc28]
-
A.
cellDivisionMachinery
chosen
Indicates the cellular components and processes that carry out and regulate the physical division of a cell into two daughter cells.
-
B.
cellStates
Indicates the various conditions or phases that a cell can be in at a given time.
-
C.
cellType
Indicates the classification relationship that specifies what type of cell an entity is or is associated with.
-
D.
cellularOrganization
Indicates how the components within a biological cell are structured, arranged, and functionally organized in relation to one another.
-
E.
geneticMaterialOrganization
Indicates how genetic material is structured, arranged, or organized within or among biological entities.
- F. None of above.
Provenance (6 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69c0085b75e88190a632f9691f9da48b |
completed | March 22, 2026, 3:18 p.m. |
| NER | Named-entity recognition | batch_69c03c9239e08190bff7ef2bd6d21ae0 |
completed | March 22, 2026, 7:01 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69c0c05eb4b8819097f203e1db94ae8f |
completed | March 23, 2026, 4:23 a.m. |
| NEDg | Description generation | batch_69c0c1dc210c8190b841e00b38577b08 |
completed | March 23, 2026, 4:30 a.m. |
| NED2 | Entity disambiguation (via description) | batch_69c0c25267588190bee988b869f14382 |
completed | March 23, 2026, 4:32 a.m. |
| PD | Predicate disambiguation | batch_69c033541d108190a34d1fde2fe9dacb |
completed | March 22, 2026, 6:22 p.m. |
Created at: March 22, 2026, 4 p.m.