Triple

T2033063
Position Surface form Disambiguated ID Type / Status
Subject Parkinson's disease E44560 entity
Predicate hasBiomarker P22710 FINISHED
Object Lewy bodies
Lewy bodies are abnormal aggregates of the protein alpha-synuclein that accumulate inside neurons and are characteristic of Parkinson’s disease and related neurodegenerative disorders.
E229729 NE FINISHED

How this triple was built (5 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Lewy bodies | Statement: [Parkinson's disease, hasBiomarker, Lewy bodies]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: Lewy bodies
Context triple: [Parkinson's disease, hasBiomarker, Lewy bodies]
  • A. Parkinson's disease
    Parkinson's disease is a progressive neurodegenerative disorder characterized primarily by motor symptoms such as tremors, rigidity, and slowed movement, caused by the loss of dopamine-producing neurons in the brain.
  • B. Huntington's chorea
    Huntington's chorea is a hereditary neurodegenerative disorder characterized by progressive motor dysfunction, cognitive decline, and psychiatric symptoms, typically manifesting in mid-adulthood.
  • C. MCI-Shirley
    MCI-Shirley is a medium- and minimum-security state prison for men located in Shirley, Massachusetts.
  • D. Virchow–Robin spaces
    Virchow–Robin spaces are perivascular, fluid-filled spaces that surround blood vessels as they penetrate the brain, visible on neuroimaging and often associated with various neurological conditions.
  • E. ALS
    ALS (amyotrophic lateral sclerosis) is a progressive neurodegenerative disease that affects nerve cells in the brain and spinal cord, leading to muscle weakness, paralysis, and ultimately respiratory failure.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Lewy bodies
Triple: [Parkinson's disease, hasBiomarker, Lewy bodies]
Generated description
Lewy bodies are abnormal aggregates of the protein alpha-synuclein that accumulate inside neurons and are characteristic of Parkinson’s disease and related neurodegenerative disorders.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: Lewy bodies
Target entity description: Lewy bodies are abnormal aggregates of the protein alpha-synuclein that accumulate inside neurons and are characteristic of Parkinson’s disease and related neurodegenerative disorders.
  • A. Parkinson's disease
    Parkinson's disease is a progressive neurodegenerative disorder characterized primarily by motor symptoms such as tremors, rigidity, and slowed movement, caused by the loss of dopamine-producing neurons in the brain.
  • B. Huntington's chorea
    Huntington's chorea is a hereditary neurodegenerative disorder characterized by progressive motor dysfunction, cognitive decline, and psychiatric symptoms, typically manifesting in mid-adulthood.
  • C. MCI-Shirley
    MCI-Shirley is a medium- and minimum-security state prison for men located in Shirley, Massachusetts.
  • D. Virchow–Robin spaces
    Virchow–Robin spaces are perivascular, fluid-filled spaces that surround blood vessels as they penetrate the brain, visible on neuroimaging and often associated with various neurological conditions.
  • E. ALS
    ALS (amyotrophic lateral sclerosis) is a progressive neurodegenerative disease that affects nerve cells in the brain and spinal cord, leading to muscle weakness, paralysis, and ultimately respiratory failure.
  • F. None of above. chosen
PD Predicate disambiguation gpt-5-mini-2025-08-07
Target predicate: hasBiomarker
Context triple: [Parkinson's disease, hasBiomarker, Lewy bodies]
  • A. diagnosticBiomarker chosen
    Indicates that one entity serves as a measurable biological indicator used to detect, confirm, or help diagnose a condition or disease in another entity.
  • B. hasTargetDisease
    Indicates that an entity (such as a treatment, study, or intervention) is directed toward, intended to affect, or primarily concerned with a specified disease.
  • C. hasMarker
    Indicates that one entity possesses, is associated with, or is identified by a specific marker.
  • D. hasTissue
    Indicates that one entity possesses, contains, or is associated with a specific tissue of another entity.
  • E. diagnosedWith
    Indicates that a subject has been identified, typically by a medical professional, as having a particular disease or medical condition.
  • F. None of above.

Provenance (6 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69a889144f2481909932f0746a93023d completed March 4, 2026, 7:33 p.m.
NER Named-entity recognition batch_69abb93255248190bd47a54a7b3c7447 completed March 7, 2026, 5:35 a.m.
NED1 Entity disambiguation (via context triple) batch_69ae1ff03d3c8190adef0224aac989bd completed March 9, 2026, 1:18 a.m.
NEDg Description generation batch_69ae2092c3ac8190b2f1f3e9c980f40a completed March 9, 2026, 1:21 a.m.
NED2 Entity disambiguation (via description) batch_69ae21c757c88190a151e01ee0825d85 completed March 9, 2026, 1:26 a.m.
PD Predicate disambiguation batch_69abb7a8125881909c0cb58b777c1faa completed March 7, 2026, 5:29 a.m.
Created at: March 4, 2026, 7:39 p.m.