Triple
T2033063
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Parkinson's disease |
E44560
|
entity |
| Predicate | hasBiomarker |
P22710
|
FINISHED |
| Object |
Lewy bodies
Lewy bodies are abnormal aggregates of the protein alpha-synuclein that accumulate inside neurons and are characteristic of Parkinson’s disease and related neurodegenerative disorders.
|
E229729
|
NE FINISHED |
How this triple was built (5 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Lewy bodies | Statement: [Parkinson's disease, hasBiomarker, Lewy bodies]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Lewy bodies Context triple: [Parkinson's disease, hasBiomarker, Lewy bodies]
-
A.
Parkinson's disease
Parkinson's disease is a progressive neurodegenerative disorder characterized primarily by motor symptoms such as tremors, rigidity, and slowed movement, caused by the loss of dopamine-producing neurons in the brain.
-
B.
Huntington's chorea
Huntington's chorea is a hereditary neurodegenerative disorder characterized by progressive motor dysfunction, cognitive decline, and psychiatric symptoms, typically manifesting in mid-adulthood.
-
C.
MCI-Shirley
MCI-Shirley is a medium- and minimum-security state prison for men located in Shirley, Massachusetts.
-
D.
Virchow–Robin spaces
Virchow–Robin spaces are perivascular, fluid-filled spaces that surround blood vessels as they penetrate the brain, visible on neuroimaging and often associated with various neurological conditions.
-
E.
ALS
ALS (amyotrophic lateral sclerosis) is a progressive neurodegenerative disease that affects nerve cells in the brain and spinal cord, leading to muscle weakness, paralysis, and ultimately respiratory failure.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Lewy bodies Triple: [Parkinson's disease, hasBiomarker, Lewy bodies]
Generated description
Lewy bodies are abnormal aggregates of the protein alpha-synuclein that accumulate inside neurons and are characteristic of Parkinson’s disease and related neurodegenerative disorders.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Lewy bodies Target entity description: Lewy bodies are abnormal aggregates of the protein alpha-synuclein that accumulate inside neurons and are characteristic of Parkinson’s disease and related neurodegenerative disorders.
-
A.
Parkinson's disease
Parkinson's disease is a progressive neurodegenerative disorder characterized primarily by motor symptoms such as tremors, rigidity, and slowed movement, caused by the loss of dopamine-producing neurons in the brain.
-
B.
Huntington's chorea
Huntington's chorea is a hereditary neurodegenerative disorder characterized by progressive motor dysfunction, cognitive decline, and psychiatric symptoms, typically manifesting in mid-adulthood.
-
C.
MCI-Shirley
MCI-Shirley is a medium- and minimum-security state prison for men located in Shirley, Massachusetts.
-
D.
Virchow–Robin spaces
Virchow–Robin spaces are perivascular, fluid-filled spaces that surround blood vessels as they penetrate the brain, visible on neuroimaging and often associated with various neurological conditions.
-
E.
ALS
ALS (amyotrophic lateral sclerosis) is a progressive neurodegenerative disease that affects nerve cells in the brain and spinal cord, leading to muscle weakness, paralysis, and ultimately respiratory failure.
- F. None of above. chosen
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: hasBiomarker Context triple: [Parkinson's disease, hasBiomarker, Lewy bodies]
-
A.
diagnosticBiomarker
chosen
Indicates that one entity serves as a measurable biological indicator used to detect, confirm, or help diagnose a condition or disease in another entity.
-
B.
hasTargetDisease
Indicates that an entity (such as a treatment, study, or intervention) is directed toward, intended to affect, or primarily concerned with a specified disease.
-
C.
hasMarker
Indicates that one entity possesses, is associated with, or is identified by a specific marker.
-
D.
hasTissue
Indicates that one entity possesses, contains, or is associated with a specific tissue of another entity.
-
E.
diagnosedWith
Indicates that a subject has been identified, typically by a medical professional, as having a particular disease or medical condition.
- F. None of above.
Provenance (6 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69a889144f2481909932f0746a93023d |
completed | March 4, 2026, 7:33 p.m. |
| NER | Named-entity recognition | batch_69abb93255248190bd47a54a7b3c7447 |
completed | March 7, 2026, 5:35 a.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69ae1ff03d3c8190adef0224aac989bd |
completed | March 9, 2026, 1:18 a.m. |
| NEDg | Description generation | batch_69ae2092c3ac8190b2f1f3e9c980f40a |
completed | March 9, 2026, 1:21 a.m. |
| NED2 | Entity disambiguation (via description) | batch_69ae21c757c88190a151e01ee0825d85 |
completed | March 9, 2026, 1:26 a.m. |
| PD | Predicate disambiguation | batch_69abb7a8125881909c0cb58b777c1faa |
completed | March 7, 2026, 5:29 a.m. |
Created at: March 4, 2026, 7:39 p.m.