Triple
T14427054
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | pMT1 |
E357722
|
entity |
| Predicate | geneticElementOf |
P84745
|
FINISHED |
| Object | Yersinia pestis CO92 |
E72523
|
NE FINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Yersinia pestis CO92 | Statement: [pMT1, geneticElementOf, Yersinia pestis CO92]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Yersinia pestis CO92 Context triple: [pMT1, geneticElementOf, Yersinia pestis CO92]
-
A.
Yersinia pestis
chosen
Yersinia pestis is a highly virulent bacterium responsible for plague, including the historic pandemics of bubonic, septicemic, and pneumonic forms.
-
B.
Yersinia
Yersinia is a genus of Gram-negative bacteria that includes several pathogenic species, most notably Yersinia pestis, the causative agent of plague.
-
C.
Francisella
Francisella is a genus of small, Gram-negative, facultatively intracellular bacteria best known for including Francisella tularensis, the causative agent of tularemia.
-
D.
Francisella tularensis
Francisella tularensis is a highly infectious, gram-negative bacterium that causes tularemia and is considered a serious potential bioterrorism agent.
-
E.
Bacillus anthracis
Bacillus anthracis is a Gram-positive, spore-forming bacterium that causes the disease anthrax in humans and animals.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: geneticElementOf Context triple: [pMT1, geneticElementOf, Yersinia pestis CO92]
-
A.
geneticElement
chosen
Indicates that one entity is a genetic element (such as a gene, sequence, or structural unit of genetic material) associated with or characterized by the other entity.
-
B.
geneticMaterial
Indicates that one entity serves as the hereditary or genetic substance (e.g., DNA or RNA) of another entity.
-
C.
hasGeneticLocus
Indicates that a genetic feature or trait is located at, or associated with, a specific position (locus) on a genome or chromosome.
-
D.
geneticStatus
Indicates the genetic condition or variant state an entity has in relation to a specific gene or set of genes.
-
E.
geneType
Indicates the specific category or classification of a gene based on its functional or structural characteristics.
- F. None of above.
Provenance (4 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d8279402a88190821ffa39ae15bccf |
completed | April 9, 2026, 10:26 p.m. |
| NER | Named-entity recognition | batch_69de911398f08190be85bc0a8bef6b1b |
completed | April 14, 2026, 7:10 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69fd5bcfa1d88190b59cefd3e305f55f |
completed | May 8, 2026, 3:43 a.m. |
| PD | Predicate disambiguation | batch_69de5c30467881908e770e3940295641 |
completed | April 14, 2026, 3:24 p.m. |
Created at: April 10, 2026, 1:18 a.m.