Triple
T11057953
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Scale tissue clearing method |
E261426
|
entity |
| Predicate | comparedWith |
P278
|
FINISHED |
| Object |
SeeDB
SeeDB is a tissue-clearing method that uses high-concentration fructose solutions to render biological samples optically transparent while preserving their structural integrity for deep imaging.
|
E902753
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: SeeDB | Statement: [Scale tissue clearing method, comparedWith, SeeDB]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: SeeDB Context triple: [Scale tissue clearing method, comparedWith, SeeDB]
-
A.
Questel
Questel is the surname of Mae Questel, the American actress best known as the original voice of Betty Boop and Olive Oyl.
-
B.
IsDB
IsDB is the Islamic Development Bank, a multilateral development finance institution that supports economic and social progress in member countries in accordance with Islamic principles.
-
C.
ERDB
ERDB is a Philippine government bureau focused on conducting research and development to support the sustainable management and conservation of the country’s ecosystems and natural resources.
-
D.
SDB
SDB is the post-nominal abbreviation used by members of the Salesians of Don Bosco, a Roman Catholic religious institute dedicated especially to the education and evangelization of youth.
-
E.
ESearch
ESearch is an NCBI E-utilities service that performs text-based searches of NCBI databases and returns lists of matching record identifiers.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: SeeDB Triple: [Scale tissue clearing method, comparedWith, SeeDB]
Generated description
SeeDB is a tissue-clearing method that uses high-concentration fructose solutions to render biological samples optically transparent while preserving their structural integrity for deep imaging.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: SeeDB Target entity description: SeeDB is a tissue-clearing method that uses high-concentration fructose solutions to render biological samples optically transparent while preserving their structural integrity for deep imaging.
-
A.
Questel
Questel is the surname of Mae Questel, the American actress best known as the original voice of Betty Boop and Olive Oyl.
-
B.
IsDB
IsDB is the Islamic Development Bank, a multilateral development finance institution that supports economic and social progress in member countries in accordance with Islamic principles.
-
C.
ERDB
ERDB is a Philippine government bureau focused on conducting research and development to support the sustainable management and conservation of the country’s ecosystems and natural resources.
-
D.
SDB
SDB is the post-nominal abbreviation used by members of the Salesians of Don Bosco, a Roman Catholic religious institute dedicated especially to the education and evangelization of youth.
-
E.
ESearch
ESearch is an NCBI E-utilities service that performs text-based searches of NCBI databases and returns lists of matching record identifiers.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d6aa98650481908609c7c56bfa7902 |
completed | April 8, 2026, 7:20 p.m. |
| NER | Named-entity recognition | batch_69d798a2efa48190b290f43dfe836501 |
completed | April 9, 2026, 12:16 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69e3c86e0e6481908f091497313132c1 |
completed | April 18, 2026, 6:07 p.m. |
| NEDg | Description generation | batch_69e3cefc00148190a1850dc6e31523c3 |
completed | April 18, 2026, 6:35 p.m. |
| NED2 | Entity disambiguation (via description) | batch_69e3d014a644819092c76aa02b573ca9 |
completed | April 18, 2026, 6:40 p.m. |
Created at: April 8, 2026, 9:26 p.m.