Triple

T8482782
Position Surface form Disambiguated ID Type / Status
Subject UniProt protein sequences E200557 entity
Predicate linkedTo P37 FINISHED
Object KEGG pathways
KEGG pathways are curated biological pathway maps in the KEGG database that represent networks of molecular interactions, reactions, and relations involved in cellular and organismal processes.
E736820 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: KEGG pathways | Statement: [UniProt protein sequences, linkedTo, KEGG pathways]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: KEGG pathways
Context triple: [UniProt protein sequences, linkedTo, KEGG pathways]
  • A. Wegeleben
    Wegeleben is a small town in the Harz district of Saxony-Anhalt, Germany, historically noted as the birthplace of high-ranking Nazi official Martin Bormann.
  • B. Kohechi route
    The Kohechi route is a remote, mountainous pilgrimage trail in Japan that links the Koyasan temple complex with the Kumano Sanzan shrines as part of the UNESCO-listed Kumano Kodo network.
  • C. PATH
    PATH is a rapid transit rail system connecting Manhattan in New York City with neighboring cities in northern New Jersey.
  • D. PATH
    PATH is an international nonprofit organization focused on improving global health through innovation, partnerships, and the development and delivery of affordable health technologies and solutions.
  • E. PATH
    PATH is the stock ticker symbol for UiPath, a leading enterprise software company specializing in robotic process automation (RPA) solutions.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: KEGG pathways
Triple: [UniProt protein sequences, linkedTo, KEGG pathways]
Generated description
KEGG pathways are curated biological pathway maps in the KEGG database that represent networks of molecular interactions, reactions, and relations involved in cellular and organismal processes.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: KEGG pathways
Target entity description: KEGG pathways are curated biological pathway maps in the KEGG database that represent networks of molecular interactions, reactions, and relations involved in cellular and organismal processes.
  • A. Wegeleben
    Wegeleben is a small town in the Harz district of Saxony-Anhalt, Germany, historically noted as the birthplace of high-ranking Nazi official Martin Bormann.
  • B. Kohechi route
    The Kohechi route is a remote, mountainous pilgrimage trail in Japan that links the Koyasan temple complex with the Kumano Sanzan shrines as part of the UNESCO-listed Kumano Kodo network.
  • C. PATH
    PATH is a rapid transit rail system connecting Manhattan in New York City with neighboring cities in northern New Jersey.
  • D. PATH
    PATH is an international nonprofit organization focused on improving global health through innovation, partnerships, and the development and delivery of affordable health technologies and solutions.
  • E. PATH
    PATH is the stock ticker symbol for UiPath, a leading enterprise software company specializing in robotic process automation (RPA) solutions.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69ca831b17988190a1f3f3413d57b820 completed March 30, 2026, 2:05 p.m.
NER Named-entity recognition batch_69cbe53845e881909eeb32863c7aa942 completed March 31, 2026, 3:16 p.m.
NED1 Entity disambiguation (via context triple) batch_69ce3a2b2e9081909f19712946c6ec20 completed April 2, 2026, 9:43 a.m.
NEDg Description generation batch_69ce3b4008a0819096bb44b46f510213 completed April 2, 2026, 9:47 a.m.
NED2 Entity disambiguation (via description) batch_69ce3c000e608190adf1b6499d382529 completed April 2, 2026, 9:50 a.m.
Created at: March 30, 2026, 6:12 p.m.