KEGG pathways
E736820
KEGG pathways are curated biological pathway maps in the KEGG database that represent networks of molecular interactions, reactions, and relations involved in cellular and organismal processes.
All labels observed (1)
| Label | Occurrences |
|---|---|
| KEGG pathways canonical | 1 |
How this entity was disambiguated
This entity first appeared as the object of triple T8482782 — resolving that mention is where its identity was fixed. The disambiguator weighed these candidate entities and picked the highlighted one (or “None”, minting a new entity). This is how homonymy is resolved: the same surface form can point to different entities.
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: KEGG pathways Context triple: [UniProt protein sequences, linkedTo, KEGG pathways]
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A.
Wegeleben
Wegeleben is a small town in the Harz district of Saxony-Anhalt, Germany, historically noted as the birthplace of high-ranking Nazi official Martin Bormann.
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B.
Kohechi route
The Kohechi route is a remote, mountainous pilgrimage trail in Japan that links the Koyasan temple complex with the Kumano Sanzan shrines as part of the UNESCO-listed Kumano Kodo network.
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C.
PATH
PATH is a rapid transit rail system connecting Manhattan in New York City with neighboring cities in northern New Jersey.
-
D.
PATH
PATH is an international nonprofit organization focused on improving global health through innovation, partnerships, and the development and delivery of affordable health technologies and solutions.
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E.
PATH
PATH is the stock ticker symbol for UiPath, a leading enterprise software company specializing in robotic process automation (RPA) solutions.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: KEGG pathways Target entity description: KEGG pathways are curated biological pathway maps in the KEGG database that represent networks of molecular interactions, reactions, and relations involved in cellular and organismal processes.
-
A.
Wegeleben
Wegeleben is a small town in the Harz district of Saxony-Anhalt, Germany, historically noted as the birthplace of high-ranking Nazi official Martin Bormann.
-
B.
Kohechi route
The Kohechi route is a remote, mountainous pilgrimage trail in Japan that links the Koyasan temple complex with the Kumano Sanzan shrines as part of the UNESCO-listed Kumano Kodo network.
-
C.
PATH
PATH is a rapid transit rail system connecting Manhattan in New York City with neighboring cities in northern New Jersey.
-
D.
PATH
PATH is an international nonprofit organization focused on improving global health through innovation, partnerships, and the development and delivery of affordable health technologies and solutions.
-
E.
PATH
PATH is the stock ticker symbol for UiPath, a leading enterprise software company specializing in robotic process automation (RPA) solutions.
- F. None of above. chosen
Statements (53)
| Predicate | Object |
|---|---|
| instanceOf |
biological pathway collection
ⓘ
curated database resource ⓘ |
| accessedVia |
KEGG API
NERFINISHED
ⓘ
KEGG web interface NERFINISHED ⓘ |
| curationType |
expert curated
ⓘ
manually curated ⓘ |
| describes |
biochemical reaction networks
ⓘ
cellular processes ⓘ gene regulatory networks ⓘ molecular interaction networks ⓘ organismal systems ⓘ |
| developedBy | Kanehisa Laboratories NERFINISHED ⓘ |
| hasAbbreviation | KEGG NERFINISHED ⓘ |
| hasComponentType |
chemical compounds
ⓘ
enzymes ⓘ genes ⓘ metabolites ⓘ pathway modules ⓘ proteins ⓘ reactions ⓘ small molecules ⓘ |
| hasLicense | subscription-based for full access ⓘ |
| hasPublisher | Kyoto Encyclopedia of Genes and Genomes NERFINISHED ⓘ |
| hasRepresentationFormat | KEGG pathway maps NERFINISHED ⓘ |
| hasSubCollection |
KEGG disease pathways
ⓘ
KEGG drug pathways NERFINISHED ⓘ KEGG metabolic pathways ⓘ KEGG signaling pathways NERFINISHED ⓘ |
| hasVisualizationType | graphical pathway diagrams ⓘ |
| linkedTo |
KEGG COMPOUND database
NERFINISHED
ⓘ
KEGG DISEASE database NERFINISHED ⓘ KEGG DRUG database NERFINISHED ⓘ KEGG GENES database NERFINISHED ⓘ KEGG ORTHOLOGY database NERFINISHED ⓘ KEGG REACTION database NERFINISHED ⓘ |
| maintainedBy | Kyoto University Bioinformatics Center NERFINISHED ⓘ |
| organizedInto |
cellular processes pathways
ⓘ
drug development pathways ⓘ environmental information processing pathways ⓘ genetic information processing pathways ⓘ human diseases pathways ⓘ metabolism pathways ⓘ organismal systems pathways ⓘ |
| partOf | KEGG database NERFINISHED ⓘ |
| supportsAnalysisOf |
human pathways
GENERATED
ⓘ
microbial pathways GENERATED ⓘ multiple model organisms GENERATED ⓘ |
| usedFor |
disease mechanism analysis
ⓘ
drug target discovery ⓘ functional annotation of genes ⓘ functional interpretation of genomes ⓘ omics data interpretation ⓘ pathway enrichment analysis ⓘ |
How these facts were elicited
The pipeline generated the facts above by prompting gpt-5.1 with this entity's name + description and the instruction below.
Instruction
You are a knowledge base construction expert. Given a subject entity and a description of it, return factual statements that you know for the subject as a JSON list of dictionaries(triples), where keys must be "subject", "predicate" and "object". The number of facts may be very high, between 25 to 50 or more, for very popular subjects. For less popular subjects, the number of facts can be very low, like 5 or 10. # Requirements - If you don't know the subject at all, return an empty list. - If the subject is not a named entity, return an empty list. - Include at least one triple where predicate is "instanceOf". - Do not get too wordy. - Separate several objects into multiple triples with one object.
Input
Subject: KEGG pathways Description of subject: KEGG pathways are curated biological pathway maps in the KEGG database that represent networks of molecular interactions, reactions, and relations involved in cellular and organismal processes.
Referenced by (1)
Full triples — surface form annotated when it differs from this entity's canonical label.