Triple

T8482718
Position Surface form Disambiguated ID Type / Status
Subject EMBL-EBI AlphaFold Protein Structure Database E200556 entity
Predicate relatedTo P37 FINISHED
Object Protein Data Bank E200553 NE FINISHED

How this triple was built (2 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Protein Data Bank | Statement: [EMBL-EBI AlphaFold Protein Structure Database, relatedTo, Protein Data Bank]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: Protein Data Bank
Context triple: [EMBL-EBI AlphaFold Protein Structure Database, relatedTo, Protein Data Bank]
  • A. Protein Data Bank chosen
    The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.
  • B. EMBL-EBI AlphaFold Protein Structure Database
    The EMBL-EBI AlphaFold Protein Structure Database is a publicly accessible resource providing predicted 3D structures of proteins generated by DeepMind’s AlphaFold system.
  • C. Protein Information Resource
    Protein Information Resource is a bioinformatics resource center that curates, annotates, and provides access to comprehensive protein sequence and functional information for the scientific community.
  • D. PDB
    PDB (Program Database) is a file format used by Microsoft development tools to store debugging and project state information for compiled programs.
  • E. Cambridge Crystallographic Data Centre
    The Cambridge Crystallographic Data Centre is a leading research organization that curates and distributes the world’s primary database of small-molecule organic and metal-organic crystal structures for the scientific community.
  • F. None of above.
  • G. Unsure - the case is ambiguous/there is not enough information to decide.

Provenance (3 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69ca831b17988190a1f3f3413d57b820 completed March 30, 2026, 2:05 p.m.
NER Named-entity recognition batch_69cbe53845e881909eeb32863c7aa942 completed March 31, 2026, 3:16 p.m.
NED1 Entity disambiguation (via context triple) batch_69ce6d0a3abc8190a6fde29e728f15fe completed April 2, 2026, 1:20 p.m.
Created at: March 30, 2026, 6:12 p.m.