Triple
T8482578
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Protein Data Bank |
E200553
|
entity |
| Predicate | hasDepositionSystem |
P83519
|
FINISHED |
| Object |
OneDep
OneDep is the unified deposition and annotation system used by the Protein Data Bank for submitting and curating macromolecular structure data.
|
E736792
|
NE FINISHED |
How this triple was built (5 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: OneDep | Statement: [Protein Data Bank, hasDepositionSystem, OneDep]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: OneDep Context triple: [Protein Data Bank, hasDepositionSystem, OneDep]
-
A.
Depend
Depend is a leading adult incontinence product brand known for its disposable underwear and protective garments designed to manage bladder leakage.
-
B.
GitHub Packages
GitHub Packages is a software package hosting and management service integrated into GitHub, enabling developers to publish, share, and reuse packages alongside their source code and workflows.
-
C.
Hackage
Hackage is the central online package repository and distribution platform for the Haskell programming language’s libraries and tools.
-
D.
Gitgit Waterfall
Gitgit Waterfall is a popular scenic cascade in northern Bali, Indonesia, known for its lush jungle surroundings and easy accessibility to visitors.
-
E.
Apt
Apt is a historic market town in southeastern France’s Vaucluse department, known for its candied fruit production and Provençal charm.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: OneDep Triple: [Protein Data Bank, hasDepositionSystem, OneDep]
Generated description
OneDep is the unified deposition and annotation system used by the Protein Data Bank for submitting and curating macromolecular structure data.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: OneDep Target entity description: OneDep is the unified deposition and annotation system used by the Protein Data Bank for submitting and curating macromolecular structure data.
-
A.
Depend
Depend is a leading adult incontinence product brand known for its disposable underwear and protective garments designed to manage bladder leakage.
-
B.
GitHub Packages
GitHub Packages is a software package hosting and management service integrated into GitHub, enabling developers to publish, share, and reuse packages alongside their source code and workflows.
-
C.
Hackage
Hackage is the central online package repository and distribution platform for the Haskell programming language’s libraries and tools.
-
D.
Gitgit Waterfall
Gitgit Waterfall is a popular scenic cascade in northern Bali, Indonesia, known for its lush jungle surroundings and easy accessibility to visitors.
-
E.
Apt
Apt is a historic market town in southeastern France’s Vaucluse department, known for its candied fruit production and Provençal charm.
- F. None of above. chosen
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: hasDepositionSystem Context triple: [Protein Data Bank, hasDepositionSystem, OneDep]
-
A.
hasDecoySystem
Indicates that an entity is equipped with or employs a decoy system designed to mislead, distract, or confuse another entity or process.
-
B.
hasChamberStructure
Indicates that an entity possesses a specific internal chamber or compartmentalized structural organization.
-
C.
hasLaboratorySystem
Indicates that one entity possesses, uses, or is associated with a particular laboratory system.
-
D.
hasDeposits
Indicates that an entity holds or maintains deposited funds or resources in another entity, such as an account or institution.
-
E.
hasDryDock
Indicates that one entity possesses, contains, or is equipped with a dry dock facility used for servicing or repairing vessels out of the water.
- F. None of above. chosen
Provenance (7 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69ca831b17988190a1f3f3413d57b820 |
completed | March 30, 2026, 2:05 p.m. |
| NER | Named-entity recognition | batch_69cbe53638c48190b742fc51d1b4442a |
completed | March 31, 2026, 3:16 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69ce3a2b2e9081909f19712946c6ec20 |
completed | April 2, 2026, 9:43 a.m. |
| NEDg | Description generation | batch_69ce3b4008a0819096bb44b46f510213 |
completed | April 2, 2026, 9:47 a.m. |
| NED2 | Entity disambiguation (via description) | batch_69ce3c000e608190adf1b6499d382529 |
completed | April 2, 2026, 9:50 a.m. |
| PD | Predicate disambiguation | batch_69cbd107633c8190a36ba50e07876918 |
completed | March 31, 2026, 1:49 p.m. |
| PDg | Predicate description generation | batch_69cbe30c2d088190b4cb89adb4e88273 |
completed | March 31, 2026, 3:06 p.m. |
Created at: March 30, 2026, 6:12 p.m.