Triple

T5981452
Position Surface form Disambiguated ID Type / Status
Subject Donepezil E133125 entity
Predicate metabolizedBy P37221 FINISHED
Object CYP2D6
CYP2D6 is a highly polymorphic cytochrome P450 enzyme that plays a major role in the metabolism of many drugs, contributing significantly to interindividual variability in drug response.
E559472 NE FINISHED

How this triple was built (5 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: CYP2D6 | Statement: [Donepezil, metabolizedBy, CYP2D6]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: CYP2D6
Context triple: [Donepezil, metabolizedBy, CYP2D6]
  • A. CYP3A4
    CYP3A4 is a major human liver and intestinal enzyme of the cytochrome P450 family responsible for metabolizing a wide range of drugs and xenobiotics.
  • B. CYP2J2
    CYP2J2 is a human cytochrome P450 enzyme primarily expressed in the heart and other tissues, involved in the metabolism of various drugs and endogenous fatty acids.
  • C. P-glycoprotein
    P-glycoprotein is a membrane-bound efflux transporter protein that pumps various drugs and xenobiotics out of cells, influencing their absorption, distribution, and resistance profiles.
  • D. BCRP
    BCRP is the Central Reserve Bank of Peru, the country’s monetary authority responsible for maintaining monetary stability and managing its currency and international reserves.
  • E. BCRP
    BCRP (Breast Cancer Resistance Protein) is an ATP-binding cassette (ABC) efflux transporter involved in multidrug resistance and the transport of various drugs and xenobiotics across cellular membranes.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: CYP2D6
Triple: [Donepezil, metabolizedBy, CYP2D6]
Generated description
CYP2D6 is a highly polymorphic cytochrome P450 enzyme that plays a major role in the metabolism of many drugs, contributing significantly to interindividual variability in drug response.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: CYP2D6
Target entity description: CYP2D6 is a highly polymorphic cytochrome P450 enzyme that plays a major role in the metabolism of many drugs, contributing significantly to interindividual variability in drug response.
  • A. CYP3A4
    CYP3A4 is a major human liver and intestinal enzyme of the cytochrome P450 family responsible for metabolizing a wide range of drugs and xenobiotics.
  • B. CYP2J2
    CYP2J2 is a human cytochrome P450 enzyme primarily expressed in the heart and other tissues, involved in the metabolism of various drugs and endogenous fatty acids.
  • C. P-glycoprotein
    P-glycoprotein is a membrane-bound efflux transporter protein that pumps various drugs and xenobiotics out of cells, influencing their absorption, distribution, and resistance profiles.
  • D. BCRP
    BCRP is the Central Reserve Bank of Peru, the country’s monetary authority responsible for maintaining monetary stability and managing its currency and international reserves.
  • E. BCRP
    BCRP (Breast Cancer Resistance Protein) is an ATP-binding cassette (ABC) efflux transporter involved in multidrug resistance and the transport of various drugs and xenobiotics across cellular membranes.
  • F. None of above. chosen
PD Predicate disambiguation gpt-5-mini-2025-08-07
Target predicate: metabolizedBy
Context triple: [Donepezil, metabolizedBy, CYP2D6]
  • A. isMetabolizedBy chosen
    Indicates that a substance is biochemically broken down or transformed through metabolic processes carried out by a specified organism, cell type, or enzyme system.
  • B. isMetabolizedPrimarilyIn
    Indicates that the substance undergoes its main metabolic processing within the specified biological system or organ.
  • C. metabolismType
    Indicates the kind of metabolic process or pathway an entity uses to obtain and transform energy or nutrients.
  • D. isMetabolizedExtent
    Indicates the degree or proportion to which one substance is metabolized by another biological system or agent.
  • E. primaryMetabolite
    Indicates that one entity is a primary metabolite, i.e., a small molecule directly involved in essential cellular metabolic processes.
  • F. None of above.

Provenance (6 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69c0086f45e8819098f73dd16d45ec9d completed March 22, 2026, 3:19 p.m.
NER Named-entity recognition batch_69c04a6921b081908a6f6323d5c7a062 completed March 22, 2026, 8 p.m.
NED1 Entity disambiguation (via context triple) batch_69c0e42174a88190b8b40cbc7815911f completed March 23, 2026, 6:56 a.m.
NEDg Description generation batch_69c0f602b79881909a6d971972f760b1 completed March 23, 2026, 8:12 a.m.
NED2 Entity disambiguation (via description) batch_69c0f6a75b908190b35d13b9593cf21f completed March 23, 2026, 8:15 a.m.
PD Predicate disambiguation batch_69c049de98648190962b14fd341c93da completed March 22, 2026, 7:58 p.m.
Created at: March 22, 2026, 4:04 p.m.