Triple
T4645716
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Drosophila melanogaster |
E101765
|
entity |
| Predicate | transgenesisMethod |
P51608
|
FINISHED |
| Object |
phiC31 integrase system
The phiC31 integrase system is a site-specific recombination tool widely used in genetic engineering to insert DNA precisely into defined genomic locations.
|
E459330
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: phiC31 integrase system | Statement: [Drosophila melanogaster, transgenesisMethod, phiC31 integrase system]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: phiC31 integrase system Context triple: [Drosophila melanogaster, transgenesisMethod, phiC31 integrase system]
-
A.
DNA ligase
DNA ligase is an essential enzyme that joins breaks in the sugar-phosphate backbone of DNA, enabling processes such as DNA replication and genetic recombination.
-
B.
Phage Group
The Phage Group was an informal collective of mid-20th-century molecular biologists who used bacteriophages to uncover fundamental principles of genetics and helped lay the foundations of molecular biology.
-
C.
A Genetic Switch: Phage Lambda and Higher Organisms
"A Genetic Switch: Phage Lambda and Higher Organisms" is a seminal molecular biology book that explains how gene regulation in bacteriophage lambda illuminates fundamental mechanisms of genetic control in more complex organisms.
-
D.
Szostak Design
Szostak Design is an architectural firm known for designing prominent cultural and performing arts venues, including the Durham Performing Arts Center in North Carolina.
-
E.
CRISPR-Cas9 gene-editing technology
CRISPR-Cas9 gene-editing technology is a revolutionary molecular tool that allows scientists to precisely modify DNA within living organisms, transforming research, medicine, and biotechnology.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: phiC31 integrase system Triple: [Drosophila melanogaster, transgenesisMethod, phiC31 integrase system]
Generated description
The phiC31 integrase system is a site-specific recombination tool widely used in genetic engineering to insert DNA precisely into defined genomic locations.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: phiC31 integrase system Target entity description: The phiC31 integrase system is a site-specific recombination tool widely used in genetic engineering to insert DNA precisely into defined genomic locations.
-
A.
DNA ligase
DNA ligase is an essential enzyme that joins breaks in the sugar-phosphate backbone of DNA, enabling processes such as DNA replication and genetic recombination.
-
B.
Phage Group
The Phage Group was an informal collective of mid-20th-century molecular biologists who used bacteriophages to uncover fundamental principles of genetics and helped lay the foundations of molecular biology.
-
C.
A Genetic Switch: Phage Lambda and Higher Organisms
"A Genetic Switch: Phage Lambda and Higher Organisms" is a seminal molecular biology book that explains how gene regulation in bacteriophage lambda illuminates fundamental mechanisms of genetic control in more complex organisms.
-
D.
Szostak Design
Szostak Design is an architectural firm known for designing prominent cultural and performing arts venues, including the Durham Performing Arts Center in North Carolina.
-
E.
CRISPR-Cas9 gene-editing technology
CRISPR-Cas9 gene-editing technology is a revolutionary molecular tool that allows scientists to precisely modify DNA within living organisms, transforming research, medicine, and biotechnology.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69bd43d3bc7c81908f81fcf380476b0f |
completed | March 20, 2026, 12:55 p.m. |
| NER | Named-entity recognition | batch_69bd623815288190b21cf59a3786363d |
completed | March 20, 2026, 3:05 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69bdfadc5dc081908d56a49895105efb |
completed | March 21, 2026, 1:56 a.m. |
| NEDg | Description generation | batch_69bdfc6751988190917ec53a8e2e27ec |
completed | March 21, 2026, 2:03 a.m. |
| NED2 | Entity disambiguation (via description) | batch_69be009e6c488190b18e1b2b4b34ecef |
completed | March 21, 2026, 2:21 a.m. |
Created at: March 20, 2026, 1:14 p.m.