Triple

T4645716
Position Surface form Disambiguated ID Type / Status
Subject Drosophila melanogaster E101765 entity
Predicate transgenesisMethod P51608 FINISHED
Object phiC31 integrase system
The phiC31 integrase system is a site-specific recombination tool widely used in genetic engineering to insert DNA precisely into defined genomic locations.
E459330 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: phiC31 integrase system | Statement: [Drosophila melanogaster, transgenesisMethod, phiC31 integrase system]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: phiC31 integrase system
Context triple: [Drosophila melanogaster, transgenesisMethod, phiC31 integrase system]
  • A. DNA ligase
    DNA ligase is an essential enzyme that joins breaks in the sugar-phosphate backbone of DNA, enabling processes such as DNA replication and genetic recombination.
  • B. Phage Group
    The Phage Group was an informal collective of mid-20th-century molecular biologists who used bacteriophages to uncover fundamental principles of genetics and helped lay the foundations of molecular biology.
  • C. A Genetic Switch: Phage Lambda and Higher Organisms
    "A Genetic Switch: Phage Lambda and Higher Organisms" is a seminal molecular biology book that explains how gene regulation in bacteriophage lambda illuminates fundamental mechanisms of genetic control in more complex organisms.
  • D. Szostak Design
    Szostak Design is an architectural firm known for designing prominent cultural and performing arts venues, including the Durham Performing Arts Center in North Carolina.
  • E. CRISPR-Cas9 gene-editing technology
    CRISPR-Cas9 gene-editing technology is a revolutionary molecular tool that allows scientists to precisely modify DNA within living organisms, transforming research, medicine, and biotechnology.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: phiC31 integrase system
Triple: [Drosophila melanogaster, transgenesisMethod, phiC31 integrase system]
Generated description
The phiC31 integrase system is a site-specific recombination tool widely used in genetic engineering to insert DNA precisely into defined genomic locations.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: phiC31 integrase system
Target entity description: The phiC31 integrase system is a site-specific recombination tool widely used in genetic engineering to insert DNA precisely into defined genomic locations.
  • A. DNA ligase
    DNA ligase is an essential enzyme that joins breaks in the sugar-phosphate backbone of DNA, enabling processes such as DNA replication and genetic recombination.
  • B. Phage Group
    The Phage Group was an informal collective of mid-20th-century molecular biologists who used bacteriophages to uncover fundamental principles of genetics and helped lay the foundations of molecular biology.
  • C. A Genetic Switch: Phage Lambda and Higher Organisms
    "A Genetic Switch: Phage Lambda and Higher Organisms" is a seminal molecular biology book that explains how gene regulation in bacteriophage lambda illuminates fundamental mechanisms of genetic control in more complex organisms.
  • D. Szostak Design
    Szostak Design is an architectural firm known for designing prominent cultural and performing arts venues, including the Durham Performing Arts Center in North Carolina.
  • E. CRISPR-Cas9 gene-editing technology
    CRISPR-Cas9 gene-editing technology is a revolutionary molecular tool that allows scientists to precisely modify DNA within living organisms, transforming research, medicine, and biotechnology.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69bd43d3bc7c81908f81fcf380476b0f completed March 20, 2026, 12:55 p.m.
NER Named-entity recognition batch_69bd623815288190b21cf59a3786363d completed March 20, 2026, 3:05 p.m.
NED1 Entity disambiguation (via context triple) batch_69bdfadc5dc081908d56a49895105efb completed March 21, 2026, 1:56 a.m.
NEDg Description generation batch_69bdfc6751988190917ec53a8e2e27ec completed March 21, 2026, 2:03 a.m.
NED2 Entity disambiguation (via description) batch_69be009e6c488190b18e1b2b4b34ecef completed March 21, 2026, 2:21 a.m.
Created at: March 20, 2026, 1:14 p.m.