Triple
T36659917
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | CYP3A5 |
E905090
|
entity |
| Predicate | orthologInHuman |
P51609
|
FINISHED |
| Object | CYP3A5 |
—
|
NE NERFINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: CYP3A5 | Statement: [CYP3A5, orthologInHuman, CYP3A5]
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: orthologInHuman Context triple: [CYP3A5, orthologInHuman, CYP3A5]
-
A.
hasOrthologsWith
chosen
Indicates that two genes or proteins in different species are orthologous, meaning they originated from a common ancestral gene and typically retain similar functions.
-
B.
homologousTo
Indicates that two entities share a common evolutionary origin or structural similarity, often implying they derive from the same ancestral feature.
-
C.
paralogOf
Indicates that two genes or proteins are evolutionarily related as paralogs, having arisen from a duplication event within the same genome.
-
D.
percentageHumanGenesWithOrthologs
Indicates the proportion of human genes that have corresponding orthologous genes in another species or set of species.
-
E.
hasHGNCID
Indicates that an entity (typically a gene) is associated with a specific identifier assigned by the HUGO Gene Nomenclature Committee (HGNC).
- F. None of above.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69f76e6e3b908190970251b30f76ad71 |
completed | May 3, 2026, 3:49 p.m. |
| NER | Named-entity recognition | batch_69f7c77b118881908cad488643e61e8a |
completed | May 3, 2026, 10:08 p.m. |
| PD | Predicate disambiguation | batch_69f7c4796ebc819084a0dc08505e5f14 |
completed | May 3, 2026, 9:56 p.m. |
Created at: May 3, 2026, 4:11 p.m.