Triple

T22796874
Position Surface form Disambiguated ID Type / Status
Subject Gemin3 E564272 entity
Predicate encodedBy P14248 FINISHED
Object DDX20 gene — NE NERFINISHED

How this triple was built (3 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: DDX20 gene | Statement: [Gemin3, encodedBy, DDX20 gene]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: DDX20 gene
Context triple: [Gemin3, encodedBy, DDX20 gene]
  • A. TAF15 gene
    The TAF15 gene encodes a multifunctional RNA-binding protein involved in transcription regulation and RNA processing, and is implicated in certain cancers through gene fusions.
  • B. HTT gene
    The HTT gene encodes the huntingtin protein, and mutations in this gene—particularly CAG trinucleotide repeat expansions—cause Huntington's disease, a progressive neurodegenerative disorder.
  • C. SMN2
    SMN2 is a human gene that produces a backup form of survival motor neuron protein and is a key therapeutic target in spinal muscular atrophy.
  • D. GRIN2A
    GRIN2A is a gene that encodes the GluN2A subunit of NMDA-type glutamate receptors, which are critical for synaptic plasticity, learning, and memory in the brain.
  • E. 5q13 (SMN1)
    5q13 (SMN1) is a gene located on chromosome 5 whose proper function is critical for motor neuron survival and whose mutations are the primary cause of spinal muscular atrophy.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07 
Target entity: DDX20 gene
Target entity description: The DDX20 gene encodes a DEAD-box RNA helicase involved in RNA processing and the assembly and function of small nuclear ribonucleoprotein (snRNP) complexes.
  • A. TAF15 gene
    The TAF15 gene encodes a multifunctional RNA-binding protein involved in transcription regulation and RNA processing, and is implicated in certain cancers through gene fusions.
  • B. HTT gene
    The HTT gene encodes the huntingtin protein, and mutations in this gene—particularly CAG trinucleotide repeat expansions—cause Huntington's disease, a progressive neurodegenerative disorder.
  • C. SMN2
    SMN2 is a human gene that produces a backup form of survival motor neuron protein and is a key therapeutic target in spinal muscular atrophy.
  • D. GRIN2A
    GRIN2A is a gene that encodes the GluN2A subunit of NMDA-type glutamate receptors, which are critical for synaptic plasticity, learning, and memory in the brain.
  • E. 5q13 (SMN1)
    5q13 (SMN1) is a gene located on chromosome 5 whose proper function is critical for motor neuron survival and whose mutations are the primary cause of spinal muscular atrophy.
  • F. None of above. chosen

Provenance (2 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69e2458185f88190b0045227ee420411 completed April 17, 2026, 2:36 p.m.
NER Named-entity recognition batch_69f17cd9b3c0819096050f43a829ec0d completed April 29, 2026, 3:36 a.m.
Created at: April 17, 2026, 3:30 p.m.