Triple
T22796872
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Gemin3 |
E564272
|
entity |
| Predicate | hasAlternativeName |
P39
|
FINISHED |
| Object | DEAD-box helicase 20 |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: DEAD-box helicase 20 | Statement: [Gemin3, hasAlternativeName, DEAD-box helicase 20]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: DEAD-box helicase 20 Context triple: [Gemin3, hasAlternativeName, DEAD-box helicase 20]
-
A.
TARDBP
TARDBP is a gene encoding the TDP-43 protein, a DNA/RNA-binding protein whose abnormal aggregation is a key pathological feature in amyotrophic lateral sclerosis and related neurodegenerative diseases.
-
B.
U1 snRNP
U1 snRNP is a small nuclear ribonucleoprotein complex essential for recognizing the 5′ splice site and initiating pre-mRNA splicing in eukaryotic cells.
-
C.
FOXA2 transcription factor
FOXA2 transcription factor is a forkhead box transcription factor that plays a key role in regulating genes involved in pancreatic beta-cell function, glucose metabolism, and endoderm development.
-
D.
Cdh1
Cdh1 is a regulatory protein that activates the anaphase-promoting complex/cyclosome (APC/C) to control mitotic exit and G1 phase progression in the cell cycle.
-
E.
TATA-box binding protein associated factor 15
TATA-box binding protein associated factor 15 (TAF15) is an RNA- and DNA-binding protein of the FET family involved in transcriptional regulation and RNA processing, and is implicated in certain cancers through gene fusions.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: DEAD-box helicase 20 Target entity description: DEAD-box helicase 20 is an ATP-dependent RNA helicase involved in RNA processing and ribonucleoprotein complex assembly, encoded by the human DDX20 gene.
-
A.
TARDBP
TARDBP is a gene encoding the TDP-43 protein, a DNA/RNA-binding protein whose abnormal aggregation is a key pathological feature in amyotrophic lateral sclerosis and related neurodegenerative diseases.
-
B.
U2 snRNP
U2 snRNP is a small nuclear ribonucleoprotein complex that recognizes the branch point sequence in pre-mRNA and plays a key role in spliceosome-mediated RNA splicing.
-
C.
U1 snRNP
U1 snRNP is a small nuclear ribonucleoprotein complex essential for recognizing the 5′ splice site and initiating pre-mRNA splicing in eukaryotic cells.
-
D.
FOXA2 transcription factor
FOXA2 transcription factor is a forkhead box transcription factor that plays a key role in regulating genes involved in pancreatic beta-cell function, glucose metabolism, and endoderm development.
-
E.
Cdh1
Cdh1 is a regulatory protein that activates the anaphase-promoting complex/cyclosome (APC/C) to control mitotic exit and G1 phase progression in the cell cycle.
- F. None of above. chosen
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2458185f88190b0045227ee420411 |
completed | April 17, 2026, 2:36 p.m. |
| NER | Named-entity recognition | batch_69f17cd9b3c0819096050f43a829ec0d |
completed | April 29, 2026, 3:36 a.m. |
Created at: April 17, 2026, 3:30 p.m.