Triple
T22796769
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | CDK6 |
E564269
|
entity |
| Predicate | belongsToPathway |
P27773
|
FINISHED |
| Object | G1/S DNA damage checkpoint pathway |
—
|
NE NERFINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: G1/S DNA damage checkpoint pathway | Statement: [CDK6, belongsToPathway, G1/S DNA damage checkpoint pathway]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: G1/S DNA damage checkpoint pathway Context triple: [CDK6, belongsToPathway, G1/S DNA damage checkpoint pathway]
-
A.
DNA damage checkpoints
chosen
DNA damage checkpoints are cellular surveillance mechanisms that monitor and respond to DNA damage by halting cell cycle progression to allow repair and maintain genomic integrity.
-
B.
Cdc25 homolog Mih1
Cdc25 homolog Mih1 is a yeast phosphatase that activates the cyclin-dependent kinase Cdc28 to promote entry into mitosis by removing inhibitory phosphorylations.
-
C.
cyclin D2
Cyclin D2 is a regulatory protein that controls progression through the G1 phase of the cell cycle by activating cyclin-dependent kinases involved in cell proliferation.
-
D.
B-type cyclins
B-type cyclins are regulatory proteins that control progression through mitosis in eukaryotic cells by activating cyclin-dependent kinases.
-
E.
Preiss–Handler pathway
The Preiss–Handler pathway is a metabolic route in which cells convert nicotinic acid (niacin) into NAD+, a vital coenzyme involved in redox reactions and energy metabolism.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2458185f88190b0045227ee420411 |
completed | April 17, 2026, 2:36 p.m. |
| NER | Named-entity recognition | batch_69f17cd9b3c0819096050f43a829ec0d |
completed | April 29, 2026, 3:36 a.m. |
Created at: April 17, 2026, 3:30 p.m.