Triple
T22692670
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Sm proteins |
E561090
|
entity |
| Predicate | isPostTranslationallyModifiedBy |
P90101
|
FINISHED |
| Object | methylation |
—
|
LITERAL FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: methylation | Statement: [Sm proteins, isPostTranslationallyModifiedBy, methylation]
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: isPostTranslationallyModifiedBy Context triple: [Sm proteins, isPostTranslationallyModifiedBy, methylation]
-
A.
hasPostTranslationalModification
chosen
Indicates that a biomolecule has undergone a specific chemical modification after its initial synthesis (translation), altering its structure or function.
-
B.
isTranslatedBy
Indicates that one entity serves as the translator or translating agent responsible for rendering the content of another entity into a different language or form.
-
C.
isMetabolizedBy
Indicates that a substance is biochemically broken down or transformed through metabolic processes carried out by a specified organism, cell type, or enzyme system.
-
D.
hasAminoAcidChange
Indicates that an entity (such as a protein or gene variant) involves or results in a specific change from one amino acid to another in its sequence.
-
E.
isPegylated
Indicates that a molecule, typically a drug or therapeutic agent, has been chemically modified by the attachment of polyethylene glycol (PEG) chains.
- F. None of above.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2454d71b48190a1f80af9f82b6fcf |
completed | April 17, 2026, 2:35 p.m. |
| NER | Named-entity recognition | batch_69f1789ba0148190891781d05ec64f3c |
completed | April 29, 2026, 3:18 a.m. |
| PD | Predicate disambiguation | batch_69ee62b2259c819091ed1387a748b9f3 |
completed | April 26, 2026, 7:08 p.m. |
Created at: April 17, 2026, 3:13 p.m.