Triple
T22690255
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | glycinamide ribonucleotide formyltransferase |
E561031
|
entity |
| Predicate | orthologIn |
P51609
|
FINISHED |
| Object | Saccharomyces cerevisiae |
—
|
NE NERFINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Saccharomyces cerevisiae | Statement: [glycinamide ribonucleotide formyltransferase, orthologIn, Saccharomyces cerevisiae]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Saccharomyces cerevisiae Context triple: [glycinamide ribonucleotide formyltransferase, orthologIn, Saccharomyces cerevisiae]
-
A.
Saccharomyces cerevisiae
chosen
Saccharomyces cerevisiae is a species of yeast widely used in baking, brewing, and scientific research as a model eukaryotic organism.
-
B.
Saccharomyces pastorianus
Saccharomyces pastorianus is a hybrid lager yeast species used in bottom-fermentation to produce most of the world’s lager beers.
-
C.
Yarrowia lipolytica
Yarrowia lipolytica is a non-conventional, oleaginous yeast widely used as a model organism and industrial workhorse for lipid production and biotechnological applications.
-
D.
Saccharomyces bayanus
Saccharomyces bayanus is a species of yeast commonly used in winemaking and cider fermentation due to its tolerance to low temperatures and high alcohol levels.
-
E.
Kluyveromyces lactis
Kluyveromyces lactis is a yeast species widely used in dairy fermentation and as a model organism for genetics and biotechnology research.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2454d71b48190a1f80af9f82b6fcf |
completed | April 17, 2026, 2:35 p.m. |
| NER | Named-entity recognition | batch_69f1789a1fd08190bce5fa0babe695d3 |
completed | April 29, 2026, 3:18 a.m. |
Created at: April 17, 2026, 3:13 p.m.