Triple
T22516263
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Cdc28 |
E556655
|
entity |
| Predicate | regulatedBy |
P86
|
FINISHED |
| Object | Sic1 |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Sic1 | Statement: [Cdc28, regulatedBy, Sic1]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Sic1 Context triple: [Cdc28, regulatedBy, Sic1]
-
A.
Cdc28
Cdc28 is the major cyclin-dependent kinase in budding yeast that drives progression through the cell cycle by phosphorylating key regulatory proteins.
-
B.
CDK6
CDK6 is a cyclin-dependent kinase that regulates cell cycle progression and is a key target in certain cancer therapies.
-
C.
CDK4
CDK4 is a cyclin-dependent kinase that regulates cell cycle progression and is a key therapeutic target in certain cancers.
-
D.
c-Myc
c-Myc is a proto-oncogene transcription factor that regulates cell growth, proliferation, and metabolism and is frequently dysregulated in cancer.
-
E.
Schizosaccharomyces pombe
Schizosaccharomyces pombe is a species of fission yeast widely used as a model organism in molecular and cell biology, particularly for studying the cell cycle and chromosome dynamics.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Sic1 Target entity description: Sic1 is a cyclin-dependent kinase inhibitor in budding yeast that controls the G1/S cell cycle transition by binding and inhibiting Cdc28–Clb complexes.
-
A.
Cdc28
Cdc28 is the major cyclin-dependent kinase in budding yeast that drives progression through the cell cycle by phosphorylating key regulatory proteins.
-
B.
CDK6
CDK6 is a cyclin-dependent kinase that regulates cell cycle progression and is a key target in certain cancer therapies.
-
C.
CDK4
CDK4 is a cyclin-dependent kinase that regulates cell cycle progression and is a key therapeutic target in certain cancers.
-
D.
c-Myc
c-Myc is a proto-oncogene transcription factor that regulates cell growth, proliferation, and metabolism and is frequently dysregulated in cancer.
-
E.
Schizosaccharomyces pombe
Schizosaccharomyces pombe is a species of fission yeast widely used as a model organism in molecular and cell biology, particularly for studying the cell cycle and chromosome dynamics.
- F. None of above. chosen
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e11e5657e881909f16ca58352c50da |
completed | April 16, 2026, 5:37 p.m. |
| NER | Named-entity recognition | batch_69f15e2cfc908190b3489228a1997f45 |
completed | April 29, 2026, 1:26 a.m. |
Created at: April 16, 2026, 8:50 p.m.