Triple
T19992634
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | APOE gene |
E494100
|
entity |
| Predicate | proteinProductParticipatesIn |
P37860
|
FINISHED |
| Object | clearance of chylomicron remnants |
—
|
LITERAL FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: clearance of chylomicron remnants | Statement: [APOE gene, proteinProductParticipatesIn, clearance of chylomicron remnants]
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: proteinProductParticipatesIn Context triple: [APOE gene, proteinProductParticipatesIn, clearance of chylomicron remnants]
-
A.
proteinProduct
Indicates that one entity is the protein that is produced or encoded by another entity (such as a gene or transcript).
-
B.
regulatoryPathway
Indicates that one entity is part of, or participates in, a biological or organizational regulatory pathway that controls the activity, expression, or behavior of another.
-
C.
regulatoryInteraction
Indicates a relationship where one entity modulates, controls, or influences the activity, expression, or function of another entity through regulatory mechanisms.
-
D.
affectsBiologicalProcess
chosen
Indicates a relationship where one entity produces a change or influence on a biological process of another entity or system.
-
E.
uniprotId
Indicates that an entity is associated with a specific UniProt database identifier for a protein.
- F. None of above.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69da626a67648190af9653832a3aeced |
completed | April 11, 2026, 3:02 p.m. |
| NER | Named-entity recognition | batch_69e65fe10ffc81908c94168b0a8ea9c9 |
completed | April 20, 2026, 5:18 p.m. |
| PD | Predicate disambiguation | batch_69e537fd311881908448f2aea8b4812e |
completed | April 19, 2026, 8:15 p.m. |
Created at: April 11, 2026, 3:31 p.m.