Triple
T19992604
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | APOE gene |
E494100
|
entity |
| Predicate | encodesProtein |
P90097
|
FINISHED |
| Object | apolipoprotein E precursor |
—
|
NE NERFINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: apolipoprotein E precursor | Statement: [APOE gene, encodesProtein, apolipoprotein E precursor]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: apolipoprotein E precursor Context triple: [APOE gene, encodesProtein, apolipoprotein E precursor]
-
A.
LDL receptor
The LDL receptor is a cell-surface protein that binds and internalizes low-density lipoprotein particles, playing a central role in cholesterol homeostasis and cardiovascular disease risk.
-
B.
APOE ε2
APOE ε2 is a common apolipoprotein E gene variant associated with a reduced risk of late-onset Alzheimer’s disease but an increased risk of type III hyperlipoproteinemia.
-
C.
APOE gene
The APOE gene encodes apolipoprotein E, a key protein in lipid metabolism whose variants, especially ε4, strongly influence risk for Alzheimer’s disease and cardiovascular disorders.
-
D.
NPC1L1 transporter
The NPC1L1 transporter is an intestinal membrane protein that mediates cholesterol absorption from the gut and is inhibited by the lipid-lowering drug ezetimibe.
-
E.
APOE ε3 allele
The APOE ε3 allele is the most common and generally considered the “neutral” variant of the apolipoprotein E gene, associated with average risk for Alzheimer’s disease and typical lipid metabolism compared to other APOE alleles.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: apolipoprotein E precursor Target entity description: Apolipoprotein E precursor is a lipid-transport protein that, after processing to apolipoprotein E, plays a key role in cholesterol metabolism and is strongly implicated in cardiovascular and neurodegenerative diseases, including Alzheimer’s disease.
-
A.
LDL receptor
The LDL receptor is a cell-surface protein that binds and internalizes low-density lipoprotein particles, playing a central role in cholesterol homeostasis and cardiovascular disease risk.
-
B.
APOE ε2
APOE ε2 is a common apolipoprotein E gene variant associated with a reduced risk of late-onset Alzheimer’s disease but an increased risk of type III hyperlipoproteinemia.
-
C.
APOE gene
chosen
The APOE gene encodes apolipoprotein E, a key protein in lipid metabolism whose variants, especially ε4, strongly influence risk for Alzheimer’s disease and cardiovascular disorders.
-
D.
NPC1L1 transporter
The NPC1L1 transporter is an intestinal membrane protein that mediates cholesterol absorption from the gut and is inhibited by the lipid-lowering drug ezetimibe.
-
E.
APOE ε3 allele
The APOE ε3 allele is the most common and generally considered the “neutral” variant of the apolipoprotein E gene, associated with average risk for Alzheimer’s disease and typical lipid metabolism compared to other APOE alleles.
- F. None of above.
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: encodesProtein Context triple: [APOE gene, encodesProtein, apolipoprotein E precursor]
-
A.
encodes
Indicates that one entity contains or represents the information, instructions, or structure of another in a coded or symbolic form.
-
B.
encodedByGene
chosen
Indicates that a particular gene is responsible for producing or specifying the sequence of a given molecule (such as a protein or RNA).
-
C.
isProtein
Indicates that the subject entity is classified as a protein.
-
D.
typicalProtein
Indicates that one entity is a representative or characteristic example of a particular protein type or class.
-
E.
proteinContent
Indicates the amount or proportion of protein present in a given entity or substance.
- F. None of above.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69da626a67648190af9653832a3aeced |
completed | April 11, 2026, 3:02 p.m. |
| NER | Named-entity recognition | batch_69e65fe10ffc81908c94168b0a8ea9c9 |
completed | April 20, 2026, 5:18 p.m. |
| PD | Predicate disambiguation | batch_69e537fd311881908448f2aea8b4812e |
completed | April 19, 2026, 8:15 p.m. |
Created at: April 11, 2026, 3:31 p.m.