Triple

T1793147
Position Surface form Disambiguated ID Type / Status
Subject AlphaFold E39542 entity
Predicate hostedOn P16030 FINISHED
Object EMBL-EBI AlphaFold Protein Structure Database
The EMBL-EBI AlphaFold Protein Structure Database is a publicly accessible resource providing predicted 3D structures of proteins generated by DeepMind’s AlphaFold system.
 E200556 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: EMBL-EBI AlphaFold Protein Structure Database | Statement: [AlphaFold, hostedOn, EMBL-EBI AlphaFold Protein Structure Database]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: EMBL-EBI AlphaFold Protein Structure Database
Context triple: [AlphaFold, hostedOn, EMBL-EBI AlphaFold Protein Structure Database]
  • A. AlphaFold
    AlphaFold is an artificial intelligence system developed by DeepMind that predicts protein 3D structures from amino acid sequences with unprecedented accuracy, revolutionizing structural biology.
  • B. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • C. Crystallographic Information Framework
    The Crystallographic Information Framework is a standardized data format and ontology used worldwide for representing, exchanging, and archiving crystallographic and related structural science data.
  • D. Cambridge Crystallographic Data Centre
    The Cambridge Crystallographic Data Centre is a leading research organization that curates and distributes the world’s primary database of small-molecule organic and metal-organic crystal structures for the scientific community.
  • E. NCBI E-utilities API
    The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: EMBL-EBI AlphaFold Protein Structure Database
Triple: [AlphaFold, hostedOn, EMBL-EBI AlphaFold Protein Structure Database]
Generated description
The EMBL-EBI AlphaFold Protein Structure Database is a publicly accessible resource providing predicted 3D structures of proteins generated by DeepMind’s AlphaFold system.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07 
Target entity: EMBL-EBI AlphaFold Protein Structure Database
Target entity description: The EMBL-EBI AlphaFold Protein Structure Database is a publicly accessible resource providing predicted 3D structures of proteins generated by DeepMind’s AlphaFold system.
  • A. AlphaFold
    AlphaFold is an artificial intelligence system developed by DeepMind that predicts protein 3D structures from amino acid sequences with unprecedented accuracy, revolutionizing structural biology.
  • B. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • C. Crystallographic Information Framework
    The Crystallographic Information Framework is a standardized data format and ontology used worldwide for representing, exchanging, and archiving crystallographic and related structural science data.
  • D. Cambridge Crystallographic Data Centre
    The Cambridge Crystallographic Data Centre is a leading research organization that curates and distributes the world’s primary database of small-molecule organic and metal-organic crystal structures for the scientific community.
  • E. NCBI E-utilities API
    The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69a88631854081909723959921e45c2b completed March 4, 2026, 7:21 p.m.
NER Named-entity recognition batch_69aa653b02448190bc475bc22187f5b0 completed March 6, 2026, 5:25 a.m.
NED1 Entity disambiguation (via context triple) batch_69adb5d26afc81909675064289d3a5b8 completed March 8, 2026, 5:45 p.m.
NEDg Description generation batch_69adb69b142c81909dd8bd40e8e440ad completed March 8, 2026, 5:49 p.m.
NED2 Entity disambiguation (via description) batch_69adb8bac99081908cf126d42c609559 completed March 8, 2026, 5:58 p.m.
Created at: March 4, 2026, 7:32 p.m.