Triple
T15478651
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | kynurenine pathway |
E376854
|
entity |
| Predicate | involvesEnzyme |
P91923
|
FINISHED |
| Object |
tryptophan 2,3-dioxygenase
Tryptophan 2,3-dioxygenase is a heme-containing enzyme that catalyzes the first and rate-limiting step in the oxidative degradation of tryptophan, playing a key role in tryptophan metabolism and regulation.
|
E1159681
|
NE FINISHED |
How this triple was built (5 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: tryptophan 2,3-dioxygenase | Statement: [kynurenine pathway, involvesEnzyme, tryptophan 2,3-dioxygenase]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: tryptophan 2,3-dioxygenase Context triple: [kynurenine pathway, involvesEnzyme, tryptophan 2,3-dioxygenase]
-
A.
aromatic L-amino acid decarboxylase
Aromatic L-amino acid decarboxylase is a pyridoxal phosphate–dependent enzyme that catalyzes the decarboxylation of aromatic L-amino acids to produce key neurotransmitters such as dopamine and serotonin.
-
B.
catechol-O-methyltransferase
Catechol-O-methyltransferase is an enzyme that inactivates catecholamine neurotransmitters and related drugs by transferring a methyl group to their catechol structures.
-
C.
Tannourine
Tannourine is a mountainous village in northern Lebanon known for its dramatic landscapes, traditional Maronite Christian heritage, and the nearby Tannourine Cedars Forest Nature Reserve.
-
D.
Flavin
Flavin is a surname most notably associated with American minimalist artist Dan Flavin, renowned for his fluorescent light installations.
-
E.
cytochrome P450 reductase
Cytochrome P450 reductase is a flavoprotein enzyme that transfers electrons from NADPH to cytochrome P450 enzymes, enabling their role in drug metabolism and biosynthesis of endogenous compounds.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: tryptophan 2,3-dioxygenase Triple: [kynurenine pathway, involvesEnzyme, tryptophan 2,3-dioxygenase]
Generated description
Tryptophan 2,3-dioxygenase is a heme-containing enzyme that catalyzes the first and rate-limiting step in the oxidative degradation of tryptophan, playing a key role in tryptophan metabolism and regulation.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: tryptophan 2,3-dioxygenase Target entity description: Tryptophan 2,3-dioxygenase is a heme-containing enzyme that catalyzes the first and rate-limiting step in the oxidative degradation of tryptophan, playing a key role in tryptophan metabolism and regulation.
-
A.
aromatic L-amino acid decarboxylase
Aromatic L-amino acid decarboxylase is a pyridoxal phosphate–dependent enzyme that catalyzes the decarboxylation of aromatic L-amino acids to produce key neurotransmitters such as dopamine and serotonin.
-
B.
catechol-O-methyltransferase
Catechol-O-methyltransferase is an enzyme that inactivates catecholamine neurotransmitters and related drugs by transferring a methyl group to their catechol structures.
-
C.
Tannourine
Tannourine is a mountainous village in northern Lebanon known for its dramatic landscapes, traditional Maronite Christian heritage, and the nearby Tannourine Cedars Forest Nature Reserve.
-
D.
Flavin
Flavin is a surname most notably associated with American minimalist artist Dan Flavin, renowned for his fluorescent light installations.
-
E.
cytochrome P450 reductase
Cytochrome P450 reductase is a flavoprotein enzyme that transfers electrons from NADPH to cytochrome P450 enzymes, enabling their role in drug metabolism and biosynthesis of endogenous compounds.
- F. None of above. chosen
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: involvesEnzyme Context triple: [kynurenine pathway, involvesEnzyme, tryptophan 2,3-dioxygenase]
-
A.
enzymeType
Indicates the specific class or category of enzyme associated with an entity or reaction.
-
B.
enzymeSystem
chosen
Indicates a relationship where an entity functions as, or is part of, a specific enzyme system involved in catalyzing biochemical reactions.
-
C.
involves
Indicates that an entity participates in, is a part of, or is implicated within a particular event, process, or relationship.
-
D.
isMetabolizedBy
Indicates that a substance is biochemically broken down or transformed through metabolic processes carried out by a specified organism, cell type, or enzyme system.
-
E.
involvesSubstitute
Indicates that one entity participates in a situation, event, or role as a replacement or stand-in for another entity.
- F. None of above.
Provenance (6 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d85cd21dcc81908646251b1c26ea00 |
completed | April 10, 2026, 2:13 a.m. |
| NER | Named-entity recognition | batch_69e03f8a77a081909f12f13660452f4a |
completed | April 16, 2026, 1:46 a.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69ff2d0b3e7881908f195701fe222371 |
completed | May 9, 2026, 12:48 p.m. |
| NEDg | Description generation | batch_69ff2e4010dc8190b0f81d03acf8ba41 |
completed | May 9, 2026, 12:53 p.m. |
| NED2 | Entity disambiguation (via description) | batch_69ff310c2d5c819093295c45307176ec |
completed | May 9, 2026, 1:05 p.m. |
| PD | Predicate disambiguation | batch_69ded2874b788190999158e0f043be21 |
completed | April 14, 2026, 11:49 p.m. |
Created at: April 10, 2026, 3:34 a.m.