Triple
T15478586
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | NAD+ |
E376853
|
entity |
| Predicate | isSubstrateOf |
P37222
|
FINISHED |
| Object |
PARP enzymes
PARP enzymes are a family of nuclear proteins that detect DNA damage and catalyze poly(ADP-ribosyl)ation of target proteins to regulate DNA repair, genomic stability, and cell death.
|
E1159678
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: PARP enzymes | Statement: [NAD+, isSubstrateOf, PARP enzymes]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: PARP enzymes Context triple: [NAD+, isSubstrateOf, PARP enzymes]
-
A.
DNA ligase
DNA ligase is an essential enzyme that joins breaks in the sugar-phosphate backbone of DNA, enabling processes such as DNA replication and genetic recombination.
-
B.
TARDBP
TARDBP is a gene encoding the TDP-43 protein, a DNA/RNA-binding protein whose abnormal aggregation is a key pathological feature in amyotrophic lateral sclerosis and related neurodegenerative diseases.
-
C.
SMCR8-WDR41 complex
The SMCR8-WDR41 complex is a protein assembly that partners with C9orf72 to regulate autophagy and lysosomal function, particularly in the context of neurodegenerative disease mechanisms.
-
D.
CDK6
CDK6 is a cyclin-dependent kinase that regulates cell cycle progression and is a key target in certain cancer therapies.
-
E.
RNA polymerase II
RNA polymerase II is the eukaryotic enzyme complex responsible for transcribing DNA into messenger RNA and many non-coding RNAs, playing a central role in gene expression.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: PARP enzymes Triple: [NAD+, isSubstrateOf, PARP enzymes]
Generated description
PARP enzymes are a family of nuclear proteins that detect DNA damage and catalyze poly(ADP-ribosyl)ation of target proteins to regulate DNA repair, genomic stability, and cell death.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: PARP enzymes Target entity description: PARP enzymes are a family of nuclear proteins that detect DNA damage and catalyze poly(ADP-ribosyl)ation of target proteins to regulate DNA repair, genomic stability, and cell death.
-
A.
DNA ligase
DNA ligase is an essential enzyme that joins breaks in the sugar-phosphate backbone of DNA, enabling processes such as DNA replication and genetic recombination.
-
B.
TARDBP
TARDBP is a gene encoding the TDP-43 protein, a DNA/RNA-binding protein whose abnormal aggregation is a key pathological feature in amyotrophic lateral sclerosis and related neurodegenerative diseases.
-
C.
SMCR8-WDR41 complex
The SMCR8-WDR41 complex is a protein assembly that partners with C9orf72 to regulate autophagy and lysosomal function, particularly in the context of neurodegenerative disease mechanisms.
-
D.
CDK6
CDK6 is a cyclin-dependent kinase that regulates cell cycle progression and is a key target in certain cancer therapies.
-
E.
RNA polymerase II
RNA polymerase II is the eukaryotic enzyme complex responsible for transcribing DNA into messenger RNA and many non-coding RNAs, playing a central role in gene expression.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d85cd21dcc81908646251b1c26ea00 |
completed | April 10, 2026, 2:13 a.m. |
| NER | Named-entity recognition | batch_69e03f8a77a081909f12f13660452f4a |
completed | April 16, 2026, 1:46 a.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69ff2d0b3e7881908f195701fe222371 |
completed | May 9, 2026, 12:48 p.m. |
| NEDg | Description generation | batch_69ff2e4010dc8190b0f81d03acf8ba41 |
completed | May 9, 2026, 12:53 p.m. |
| NED2 | Entity disambiguation (via description) | batch_69ff310c2d5c819093295c45307176ec |
completed | May 9, 2026, 1:05 p.m. |
Created at: April 10, 2026, 3:34 a.m.