Triple

T15478586
Position Surface form Disambiguated ID Type / Status
Subject NAD+ E376853 entity
Predicate isSubstrateOf P37222 FINISHED
Object PARP enzymes
PARP enzymes are a family of nuclear proteins that detect DNA damage and catalyze poly(ADP-ribosyl)ation of target proteins to regulate DNA repair, genomic stability, and cell death.
E1159678 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: PARP enzymes | Statement: [NAD+, isSubstrateOf, PARP enzymes]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: PARP enzymes
Context triple: [NAD+, isSubstrateOf, PARP enzymes]
  • A. DNA ligase
    DNA ligase is an essential enzyme that joins breaks in the sugar-phosphate backbone of DNA, enabling processes such as DNA replication and genetic recombination.
  • B. TARDBP
    TARDBP is a gene encoding the TDP-43 protein, a DNA/RNA-binding protein whose abnormal aggregation is a key pathological feature in amyotrophic lateral sclerosis and related neurodegenerative diseases.
  • C. SMCR8-WDR41 complex
    The SMCR8-WDR41 complex is a protein assembly that partners with C9orf72 to regulate autophagy and lysosomal function, particularly in the context of neurodegenerative disease mechanisms.
  • D. CDK6
    CDK6 is a cyclin-dependent kinase that regulates cell cycle progression and is a key target in certain cancer therapies.
  • E. RNA polymerase II
    RNA polymerase II is the eukaryotic enzyme complex responsible for transcribing DNA into messenger RNA and many non-coding RNAs, playing a central role in gene expression.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: PARP enzymes
Triple: [NAD+, isSubstrateOf, PARP enzymes]
Generated description
PARP enzymes are a family of nuclear proteins that detect DNA damage and catalyze poly(ADP-ribosyl)ation of target proteins to regulate DNA repair, genomic stability, and cell death.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: PARP enzymes
Target entity description: PARP enzymes are a family of nuclear proteins that detect DNA damage and catalyze poly(ADP-ribosyl)ation of target proteins to regulate DNA repair, genomic stability, and cell death.
  • A. DNA ligase
    DNA ligase is an essential enzyme that joins breaks in the sugar-phosphate backbone of DNA, enabling processes such as DNA replication and genetic recombination.
  • B. TARDBP
    TARDBP is a gene encoding the TDP-43 protein, a DNA/RNA-binding protein whose abnormal aggregation is a key pathological feature in amyotrophic lateral sclerosis and related neurodegenerative diseases.
  • C. SMCR8-WDR41 complex
    The SMCR8-WDR41 complex is a protein assembly that partners with C9orf72 to regulate autophagy and lysosomal function, particularly in the context of neurodegenerative disease mechanisms.
  • D. CDK6
    CDK6 is a cyclin-dependent kinase that regulates cell cycle progression and is a key target in certain cancer therapies.
  • E. RNA polymerase II
    RNA polymerase II is the eukaryotic enzyme complex responsible for transcribing DNA into messenger RNA and many non-coding RNAs, playing a central role in gene expression.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69d85cd21dcc81908646251b1c26ea00 completed April 10, 2026, 2:13 a.m.
NER Named-entity recognition batch_69e03f8a77a081909f12f13660452f4a completed April 16, 2026, 1:46 a.m.
NED1 Entity disambiguation (via context triple) batch_69ff2d0b3e7881908f195701fe222371 completed May 9, 2026, 12:48 p.m.
NEDg Description generation batch_69ff2e4010dc8190b0f81d03acf8ba41 completed May 9, 2026, 12:53 p.m.
NED2 Entity disambiguation (via description) batch_69ff310c2d5c819093295c45307176ec completed May 9, 2026, 1:05 p.m.
Created at: April 10, 2026, 3:34 a.m.