Triple
T12544237
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Yamanaka factors Oct3/4, Sox2, Klf4, and c-Myc |
E299919
|
entity |
| Predicate | organismContext |
P98601
|
FINISHED |
| Object | Mus musculus |
E200190
|
NE FINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Mus musculus | Statement: [Yamanaka factors Oct3/4, Sox2, Klf4, and c-Myc, organismContext, Mus musculus]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Mus musculus Context triple: [Yamanaka factors Oct3/4, Sox2, Klf4, and c-Myc, organismContext, Mus musculus]
-
A.
Mus musculus castaneus
Mus musculus castaneus is an Asian subspecies of the house mouse commonly used in genetic and evolutionary research.
-
B.
house mouse (Mus musculus)
chosen
The house mouse (Mus musculus) is a small, globally distributed rodent that is one of the most important mammalian model organisms in biomedical and genetic research.
-
C.
Rattus
Rattus is a genus of rodents that includes several species of rats, many of which are widespread as commensal animals closely associated with human habitats.
-
D.
Mause
Mause is a character in Allan Ramsay’s pastoral play "The Gentle Shepherd," typically depicted as an old, wise woman who provides comic relief and guidance.
-
E.
Masturus
Masturus is a genus of ocean sunfishes, large laterally compressed marine fishes known for their distinctive truncated bodies and pelagic lifestyle.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: organismContext Context triple: [Yamanaka factors Oct3/4, Sox2, Klf4, and c-Myc, organismContext, Mus musculus]
-
A.
hasOrganism
chosen
Indicates that one entity is an organism associated with, contained in, or otherwise possessed by another entity.
-
B.
targetOrganism
Indicates that an action, process, or effect is directed toward or intended to impact a particular organism.
-
C.
organismType
Indicates the biological classification or kind of organism that an entity is.
-
D.
detectsOrganism
Indicates that one entity identifies, discovers, or observes the presence of another organism.
-
E.
studiedOrganism
Indicates that an entity conducted study or research on a particular organism.
- F. None of above.
Provenance (4 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d6ada707008190aaec1238117c9379 |
completed | April 8, 2026, 7:33 p.m. |
| NER | Named-entity recognition | batch_69d95f5507b481908d13cc317b7402f6 |
completed | April 10, 2026, 8:36 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69f65eb317148190990d47f50324a1b1 |
completed | May 2, 2026, 8:29 p.m. |
| PD | Predicate disambiguation | batch_69d95410d0b0819097646edd1b837104 |
completed | April 10, 2026, 7:48 p.m. |
Created at: April 8, 2026, 9:57 p.m.