Triple
T12544231
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Yamanaka factors Oct3/4, Sox2, Klf4, and c-Myc |
E299919
|
entity |
| Predicate | hasMember |
P10
|
FINISHED |
| Object | Sox2 |
E988826
|
NE FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Sox2 | Statement: [Yamanaka factors Oct3/4, Sox2, Klf4, and c-Myc, hasMember, Sox2]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Sox2 Context triple: [Yamanaka factors Oct3/4, Sox2, Klf4, and c-Myc, hasMember, Sox2]
-
A.
Sox2
chosen
Sox2 is a key transcription factor that maintains stem cell pluripotency and self-renewal and is widely used in cellular reprogramming.
-
B.
Oct3/4
Oct3/4 (also known as POU5F1) is a key transcription factor that maintains pluripotency and self-renewal in embryonic stem cells and is widely used in cellular reprogramming.
-
C.
c-Myc
c-Myc is a proto-oncogene transcription factor that regulates cell growth, proliferation, and metabolism and is frequently dysregulated in cancer.
-
D.
Hoxa
Hoxa is a small settlement on the Orkney island of South Ronaldsay in Scotland, known for its coastal setting and nearby historic sites.
-
E.
TARDBP
TARDBP is a gene encoding the TDP-43 protein, a DNA/RNA-binding protein whose abnormal aggregation is a key pathological feature in amyotrophic lateral sclerosis and related neurodegenerative diseases.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d6ada707008190aaec1238117c9379 |
completed | April 8, 2026, 7:33 p.m. |
| NER | Named-entity recognition | batch_69d9547d6df4819080db8415d386ed38 |
completed | April 10, 2026, 7:50 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69f65eb317148190990d47f50324a1b1 |
completed | May 2, 2026, 8:29 p.m. |
Created at: April 8, 2026, 9:57 p.m.