Triple
T11466919
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Bacillus |
E271801
|
entity |
| Predicate | usedAsModelOrganism |
P32525
|
FINISHED |
| Object | Bacillus subtilis |
E928065
|
NE FINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Bacillus subtilis | Statement: [Bacillus, usedAsModelOrganism, Bacillus subtilis]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Bacillus subtilis Context triple: [Bacillus, usedAsModelOrganism, Bacillus subtilis]
-
A.
Bacillus subtilis
chosen
Bacillus subtilis is a rod-shaped, Gram-positive, endospore-forming bacterium widely used as a model organism in microbiology and biotechnology.
-
B.
Bacillus megaterium
Bacillus megaterium is a large, rod-shaped, non-pathogenic soil bacterium widely used as a model organism and in industrial biotechnology for enzyme and protein production.
-
C.
Bacillus
Bacillus is a genus of rod-shaped, endospore-forming bacteria that includes both harmless environmental species and notable pathogens such as Bacillus anthracis.
-
D.
Streptomyces
Streptomyces is a genus of filamentous, soil-dwelling bacteria renowned for producing a wide variety of clinically important antibiotics and other bioactive compounds.
-
E.
Escherichia coli
Escherichia coli is a widely studied, rod-shaped bacterium commonly found in the intestines of warm-blooded animals and extensively used as a model organism in microbiology and genetics.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: usedAsModelOrganism Context triple: [Bacillus, usedAsModelOrganism, Bacillus subtilis]
-
A.
isModelOrganism
chosen
Indicates that one organism is used as a representative experimental system for studying biological processes relevant to other organisms.
-
B.
notableModelOrganism
Indicates that an organism is widely recognized and frequently used as a standard or reference model for scientific research or experimentation.
-
C.
containsModelOrganisms
Indicates that one entity includes or incorporates model organisms as part of its contents or composition.
-
D.
studiedOrganism
Indicates that an entity conducted study or research on a particular organism.
-
E.
hasOrganism
Indicates that one entity is an organism associated with, contained in, or otherwise possessed by another entity.
- F. None of above.
Provenance (4 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d6aae0c8d881908a5a360c0be3242e |
completed | April 8, 2026, 7:22 p.m. |
| NER | Named-entity recognition | batch_69d822f5eb988190b309b8e309f6d1a5 |
completed | April 9, 2026, 10:06 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69ef12c1cd048190b58410542005acbc |
completed | April 27, 2026, 7:39 a.m. |
| PD | Predicate disambiguation | batch_69d80867ff248190bb157fa9e355353b |
completed | April 9, 2026, 8:13 p.m. |
Created at: April 8, 2026, 9:35 p.m.