Triple
T11456962
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Denisovans |
E271552
|
entity |
| Predicate | associatedGene |
P47344
|
FINISHED |
| Object |
EPAS1
EPAS1 is a human gene encoding a hypoxia-inducible transcription factor that plays a key role in adaptation to low-oxygen environments, notably implicated in high-altitude tolerance.
|
E925672
|
NE FINISHED |
How this triple was built (5 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: EPAS1 | Statement: [Denisovans, associatedGene, EPAS1]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: EPAS1 Context triple: [Denisovans, associatedGene, EPAS1]
-
A.
EPAS
EPAS is an international accreditation system for business and management programmes, recognized for assessing the quality and rigor of higher education offerings worldwide.
-
B.
EPAS
EPAS is the European Union’s strategic and regulatory framework for improving aviation safety across member states.
-
C.
GNAS
GNAS is the abbreviation for the Georgian National Academy of Sciences, the leading scientific institution in Georgia that coordinates and promotes research across various disciplines.
-
D.
HDY
HDY is the IATA airport code for Hat Yai International Airport in southern Thailand, a key regional hub serving the city of Hat Yai and the surrounding area.
-
E.
HDY
HDY is the National Rail station code for Headingley railway station in Leeds, West Yorkshire, England.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: EPAS1 Triple: [Denisovans, associatedGene, EPAS1]
Generated description
EPAS1 is a human gene encoding a hypoxia-inducible transcription factor that plays a key role in adaptation to low-oxygen environments, notably implicated in high-altitude tolerance.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: EPAS1 Target entity description: EPAS1 is a human gene encoding a hypoxia-inducible transcription factor that plays a key role in adaptation to low-oxygen environments, notably implicated in high-altitude tolerance.
-
A.
EPAS
EPAS is an international accreditation system for business and management programmes, recognized for assessing the quality and rigor of higher education offerings worldwide.
-
B.
EPAS
EPAS is the European Union’s strategic and regulatory framework for improving aviation safety across member states.
-
C.
GNAS
GNAS is the abbreviation for the Georgian National Academy of Sciences, the leading scientific institution in Georgia that coordinates and promotes research across various disciplines.
-
D.
HDY
HDY is the IATA airport code for Hat Yai International Airport in southern Thailand, a key regional hub serving the city of Hat Yai and the surrounding area.
-
E.
HDY
HDY is the National Rail station code for Headingley railway station in Leeds, West Yorkshire, England.
- F. None of above. chosen
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: associatedGene Context triple: [Denisovans, associatedGene, EPAS1]
-
A.
targetsGene
Indicates that one entity is directed toward, acts upon, or is intended to affect a specific gene.
-
B.
encodedByGene
Indicates that a particular gene is responsible for producing or specifying the sequence of a given molecule (such as a protein or RNA).
-
C.
associatedGens
chosen
Indicates a relationship where one entity is linked or connected to one or more genes in some relevant biological or functional context.
-
D.
geneSymbol
Indicates the standardized short-form symbol assigned to a specific gene.
-
E.
hasPharmacogenomicAssociation
Indicates that there is a documented relationship between a genetic variant and a drug’s response, efficacy, or toxicity.
- F. None of above.
Provenance (6 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d6aadff8888190a13f253f0d460874 |
completed | April 8, 2026, 7:22 p.m. |
| NER | Named-entity recognition | batch_69d822f2138081909408c7916cef99c9 |
completed | April 9, 2026, 10:06 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69e5d3e197c881909db2e4e59c61c3c3 |
completed | April 20, 2026, 7:21 a.m. |
| NEDg | Description generation | batch_69e5d5cc251081908b85f264940a6545 |
completed | April 20, 2026, 7:29 a.m. |
| NED2 | Entity disambiguation (via description) | batch_69e5d924963c8190bfc55ffeb529a499 |
completed | April 20, 2026, 7:43 a.m. |
| PD | Predicate disambiguation | batch_69d80867ff248190bb157fa9e355353b |
completed | April 9, 2026, 8:13 p.m. |
Created at: April 8, 2026, 9:35 p.m.