Triple

T11456962
Position Surface form Disambiguated ID Type / Status
Subject Denisovans E271552 entity
Predicate associatedGene P47344 FINISHED
Object EPAS1
EPAS1 is a human gene encoding a hypoxia-inducible transcription factor that plays a key role in adaptation to low-oxygen environments, notably implicated in high-altitude tolerance.
E925672 NE FINISHED

How this triple was built (5 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: EPAS1 | Statement: [Denisovans, associatedGene, EPAS1]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: EPAS1
Context triple: [Denisovans, associatedGene, EPAS1]
  • A. EPAS
    EPAS is an international accreditation system for business and management programmes, recognized for assessing the quality and rigor of higher education offerings worldwide.
  • B. EPAS
    EPAS is the European Union’s strategic and regulatory framework for improving aviation safety across member states.
  • C. GNAS
    GNAS is the abbreviation for the Georgian National Academy of Sciences, the leading scientific institution in Georgia that coordinates and promotes research across various disciplines.
  • D. HDY
    HDY is the IATA airport code for Hat Yai International Airport in southern Thailand, a key regional hub serving the city of Hat Yai and the surrounding area.
  • E. HDY
    HDY is the National Rail station code for Headingley railway station in Leeds, West Yorkshire, England.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: EPAS1
Triple: [Denisovans, associatedGene, EPAS1]
Generated description
EPAS1 is a human gene encoding a hypoxia-inducible transcription factor that plays a key role in adaptation to low-oxygen environments, notably implicated in high-altitude tolerance.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: EPAS1
Target entity description: EPAS1 is a human gene encoding a hypoxia-inducible transcription factor that plays a key role in adaptation to low-oxygen environments, notably implicated in high-altitude tolerance.
  • A. EPAS
    EPAS is an international accreditation system for business and management programmes, recognized for assessing the quality and rigor of higher education offerings worldwide.
  • B. EPAS
    EPAS is the European Union’s strategic and regulatory framework for improving aviation safety across member states.
  • C. GNAS
    GNAS is the abbreviation for the Georgian National Academy of Sciences, the leading scientific institution in Georgia that coordinates and promotes research across various disciplines.
  • D. HDY
    HDY is the IATA airport code for Hat Yai International Airport in southern Thailand, a key regional hub serving the city of Hat Yai and the surrounding area.
  • E. HDY
    HDY is the National Rail station code for Headingley railway station in Leeds, West Yorkshire, England.
  • F. None of above. chosen
PD Predicate disambiguation gpt-5-mini-2025-08-07
Target predicate: associatedGene
Context triple: [Denisovans, associatedGene, EPAS1]
  • A. targetsGene
    Indicates that one entity is directed toward, acts upon, or is intended to affect a specific gene.
  • B. encodedByGene
    Indicates that a particular gene is responsible for producing or specifying the sequence of a given molecule (such as a protein or RNA).
  • C. associatedGens chosen
    Indicates a relationship where one entity is linked or connected to one or more genes in some relevant biological or functional context.
  • D. geneSymbol
    Indicates the standardized short-form symbol assigned to a specific gene.
  • E. hasPharmacogenomicAssociation
    Indicates that there is a documented relationship between a genetic variant and a drug’s response, efficacy, or toxicity.
  • F. None of above.

Provenance (6 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69d6aadff8888190a13f253f0d460874 completed April 8, 2026, 7:22 p.m.
NER Named-entity recognition batch_69d822f2138081909408c7916cef99c9 completed April 9, 2026, 10:06 p.m.
NED1 Entity disambiguation (via context triple) batch_69e5d3e197c881909db2e4e59c61c3c3 completed April 20, 2026, 7:21 a.m.
NEDg Description generation batch_69e5d5cc251081908b85f264940a6545 completed April 20, 2026, 7:29 a.m.
NED2 Entity disambiguation (via description) batch_69e5d924963c8190bfc55ffeb529a499 completed April 20, 2026, 7:43 a.m.
PD Predicate disambiguation batch_69d80867ff248190bb157fa9e355353b completed April 9, 2026, 8:13 p.m.
Created at: April 8, 2026, 9:35 p.m.