Triple
T11074236
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | HER2 receptor |
E261824
|
entity |
| Predicate | activatesPathway |
P38196
|
FINISHED |
| Object |
MAPK signaling pathway
The MAPK signaling pathway is a key intracellular cascade that transmits growth and survival signals from cell surface receptors to the nucleus, regulating processes such as proliferation, differentiation, and apoptosis.
|
E902874
|
NE FINISHED |
How this triple was built (5 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: MAPK signaling pathway | Statement: [HER2 receptor, activatesPathway, MAPK signaling pathway]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: MAPK signaling pathway Context triple: [HER2 receptor, activatesPathway, MAPK signaling pathway]
-
A.
Reactome pathways
Reactome pathways are curated, peer-reviewed biological pathways that map molecular interactions and processes in human biology and other species.
-
B.
KEGG pathways
KEGG pathways are curated biological pathway maps in the KEGG database that represent networks of molecular interactions, reactions, and relations involved in cellular and organismal processes.
-
C.
Toll-like receptor signaling pathway
The Toll-like receptor signaling pathway is a key innate immune signaling cascade that detects pathogen-associated molecular patterns and activates downstream inflammatory and antiviral responses.
-
D.
ERK
ERK is the abbreviation for the Evangelical Reformed Church, a Protestant regional church within the Reformed tradition.
-
E.
Src family kinases
Src family kinases are a group of non-receptor tyrosine kinases that regulate key cellular processes such as proliferation, differentiation, survival, and migration, and are often implicated in cancer and immune signaling.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: MAPK signaling pathway Triple: [HER2 receptor, activatesPathway, MAPK signaling pathway]
Generated description
The MAPK signaling pathway is a key intracellular cascade that transmits growth and survival signals from cell surface receptors to the nucleus, regulating processes such as proliferation, differentiation, and apoptosis.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: MAPK signaling pathway Target entity description: The MAPK signaling pathway is a key intracellular cascade that transmits growth and survival signals from cell surface receptors to the nucleus, regulating processes such as proliferation, differentiation, and apoptosis.
-
A.
Reactome pathways
Reactome pathways are curated, peer-reviewed biological pathways that map molecular interactions and processes in human biology and other species.
-
B.
KEGG pathways
KEGG pathways are curated biological pathway maps in the KEGG database that represent networks of molecular interactions, reactions, and relations involved in cellular and organismal processes.
-
C.
Toll-like receptor signaling pathway
The Toll-like receptor signaling pathway is a key innate immune signaling cascade that detects pathogen-associated molecular patterns and activates downstream inflammatory and antiviral responses.
-
D.
ERK
ERK is the abbreviation for the Evangelical Reformed Church, a Protestant regional church within the Reformed tradition.
-
E.
Src family kinases
Src family kinases are a group of non-receptor tyrosine kinases that regulate key cellular processes such as proliferation, differentiation, survival, and migration, and are often implicated in cancer and immune signaling.
- F. None of above. chosen
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: activatesPathway Context triple: [HER2 receptor, activatesPathway, MAPK signaling pathway]
-
A.
hasPathway
Indicates that there exists a route, channel, or sequence of steps through which one entity leads, connects, or gives access to another.
-
B.
supportsPathway
chosen
Indicates that one entity contributes to, enables, or maintains the functioning or progression of a specified pathway.
-
C.
activationMechanism
Indicates the process or method by which one entity initiates, triggers, or enables the activity or functioning of another entity.
-
D.
transferPathwayTo
Indicates the act of moving or reassigning a pathway (such as a process, route, or channel) from one entity to another.
-
E.
hasActivityRegulation
Indicates that one entity exerts control over the level, timing, or manner of another entity’s activity.
- F. None of above.
Provenance (6 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d6aa9983c08190b0ef61603b69feac |
completed | April 8, 2026, 7:20 p.m. |
| NER | Named-entity recognition | batch_69d7994e32fc8190a6591d9e82b68f75 |
completed | April 9, 2026, 12:19 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69e3c8cc77988190aad54f56dbd0f8cf |
completed | April 18, 2026, 6:09 p.m. |
| NEDg | Description generation | batch_69e3cefc00148190a1850dc6e31523c3 |
completed | April 18, 2026, 6:35 p.m. |
| NED2 | Entity disambiguation (via description) | batch_69e3d014a644819092c76aa02b573ca9 |
completed | April 18, 2026, 6:40 p.m. |
| PD | Predicate disambiguation | batch_69d74415403c81909778bcd829e8832e |
completed | April 9, 2026, 6:15 a.m. |
Created at: April 8, 2026, 9:26 p.m.