Triple

T11057991
Position Surface form Disambiguated ID Type / Status
Subject 3DISCO tissue clearing method E261427 entity
Predicate relatedTo P37 FINISHED
Object CLARITY tissue clearing method E47391 NE FINISHED

How this triple was built (2 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: CLARITY tissue clearing method | Statement: [3DISCO tissue clearing method, relatedTo, CLARITY tissue clearing method]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: CLARITY tissue clearing method
Context triple: [3DISCO tissue clearing method, relatedTo, CLARITY tissue clearing method]
  • A. CLARITY tissue-clearing method chosen
    CLARITY is a neuroscience technique that renders biological tissues transparent while preserving their molecular structure, enabling high-resolution, three-dimensional imaging of intact organs such as the brain.
  • B. 3DISCO tissue clearing method
    The 3DISCO tissue clearing method is a solvent-based technique that renders biological tissues transparent to enable high-resolution three-dimensional imaging of intact organs and organisms.
  • C. Scale tissue clearing method
    The Scale tissue clearing method is a chemical technique that renders biological tissues optically transparent while preserving fluorescent signals, enabling deep, high-resolution imaging of intact specimens.
  • D. Zernike phase-contrast method
    The Zernike phase-contrast method is a microscopy technique that converts phase shifts in light passing through transparent specimens into intensity differences, enabling detailed visualization of living cells and other unstained samples.
  • E. Yamanaka factors
    Yamanaka factors are a set of transcription factors that can reprogram adult somatic cells into induced pluripotent stem cells, revolutionizing regenerative medicine and stem cell research.
  • F. None of above.
  • G. Unsure - the case is ambiguous/there is not enough information to decide.

Provenance (3 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69d6aa98650481908609c7c56bfa7902 completed April 8, 2026, 7:20 p.m.
NER Named-entity recognition batch_69d798a2efa48190b290f43dfe836501 completed April 9, 2026, 12:16 p.m.
NED1 Entity disambiguation (via context triple) batch_69e441a5b5a481908a6fdf5f8e9bca8b completed April 19, 2026, 2:44 a.m.
Created at: April 8, 2026, 9:26 p.m.