Triple
T11057989
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | 3DISCO tissue clearing method |
E261427
|
entity |
| Predicate | relatedTo |
P37
|
FINISHED |
| Object |
uDISCO tissue clearing method
uDISCO tissue clearing method is an advanced whole-organ and whole-body clearing technique that preserves fluorescence and enables high-resolution, three-dimensional imaging of large biological specimens.
|
E261427
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: uDISCO tissue clearing method | Statement: [3DISCO tissue clearing method, relatedTo, uDISCO tissue clearing method]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: uDISCO tissue clearing method Context triple: [3DISCO tissue clearing method, relatedTo, uDISCO tissue clearing method]
-
A.
3DISCO tissue clearing method
The 3DISCO tissue clearing method is a solvent-based technique that renders biological tissues transparent to enable high-resolution three-dimensional imaging of intact organs and organisms.
-
B.
CLARITY tissue-clearing method
CLARITY is a neuroscience technique that renders biological tissues transparent while preserving their molecular structure, enabling high-resolution, three-dimensional imaging of intact organs such as the brain.
-
C.
Scale tissue clearing method
The Scale tissue clearing method is a chemical technique that renders biological tissues optically transparent while preserving fluorescent signals, enabling deep, high-resolution imaging of intact specimens.
-
D.
Zernike phase-contrast method
The Zernike phase-contrast method is a microscopy technique that converts phase shifts in light passing through transparent specimens into intensity differences, enabling detailed visualization of living cells and other unstained samples.
-
E.
Yamanaka factors
Yamanaka factors are a set of transcription factors that can reprogram adult somatic cells into induced pluripotent stem cells, revolutionizing regenerative medicine and stem cell research.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: uDISCO tissue clearing method Triple: [3DISCO tissue clearing method, relatedTo, uDISCO tissue clearing method]
Generated description
uDISCO tissue clearing method is an advanced whole-organ and whole-body clearing technique that preserves fluorescence and enables high-resolution, three-dimensional imaging of large biological specimens.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: uDISCO tissue clearing method Target entity description: uDISCO tissue clearing method is an advanced whole-organ and whole-body clearing technique that preserves fluorescence and enables high-resolution, three-dimensional imaging of large biological specimens.
-
A.
3DISCO tissue clearing method
chosen
The 3DISCO tissue clearing method is a solvent-based technique that renders biological tissues transparent to enable high-resolution three-dimensional imaging of intact organs and organisms.
-
B.
CLARITY tissue-clearing method
CLARITY is a neuroscience technique that renders biological tissues transparent while preserving their molecular structure, enabling high-resolution, three-dimensional imaging of intact organs such as the brain.
-
C.
Scale tissue clearing method
The Scale tissue clearing method is a chemical technique that renders biological tissues optically transparent while preserving fluorescent signals, enabling deep, high-resolution imaging of intact specimens.
-
D.
Zernike phase-contrast method
The Zernike phase-contrast method is a microscopy technique that converts phase shifts in light passing through transparent specimens into intensity differences, enabling detailed visualization of living cells and other unstained samples.
-
E.
Yamanaka factors
Yamanaka factors are a set of transcription factors that can reprogram adult somatic cells into induced pluripotent stem cells, revolutionizing regenerative medicine and stem cell research.
- F. None of above.
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d6aa98650481908609c7c56bfa7902 |
completed | April 8, 2026, 7:20 p.m. |
| NER | Named-entity recognition | batch_69d798a2efa48190b290f43dfe836501 |
completed | April 9, 2026, 12:16 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69e3e74e1dc881908afc01b328cda843 |
completed | April 18, 2026, 8:19 p.m. |
| NEDg | Description generation | batch_69e3f01f9d048190b553184f0f6ce29c |
completed | April 18, 2026, 8:57 p.m. |
| NED2 | Entity disambiguation (via description) | batch_69e3f3fef9308190b0354ed436c32e4c |
completed | April 18, 2026, 9:13 p.m. |
Created at: April 8, 2026, 9:26 p.m.