GEO DataSets
E569121
GEO DataSets is a public NCBI repository that organizes and provides access to curated gene expression and other functional genomics experiment data.
Statements (66)
| Predicate | Object |
|---|---|
| instanceOf |
biological database
ⓘ
functional genomics repository ⓘ gene expression database ⓘ |
| accessibleAt | https://www.ncbi.nlm.nih.gov/gds ⓘ |
| accessibleVia |
FTP
ⓘ
NCBI E-utilities API NERFINISHED ⓘ web interface ⓘ |
| accessRestriction | no login required for data download ⓘ |
| contains |
curated experiment records
ⓘ
platform records ⓘ sample records ⓘ series records ⓘ supplementary files ⓘ |
| countryOfOperator |
United States of America
ⓘ
surface form:
United States
|
| dataCuration |
annotated with controlled vocabularies
ⓘ
curated by NCBI staff ⓘ |
| dataModel |
GDS (GEO DataSet) records
ⓘ
GPL (GEO Platform) records ⓘ GSE (GEO Series) records ⓘ GSM (GEO Sample) records ⓘ |
| dataSource |
submitted experiments from consortia
ⓘ
submitted experiments from research laboratories ⓘ submitted experiments from sequencing centers ⓘ |
| hasFeature |
downloadable data tables
ⓘ
field-specific search filters ⓘ links to related NCBI resources ⓘ searchable metadata ⓘ text-based search ⓘ |
| hasIdentifierPattern |
GDSnnnnn
ⓘ
GPLnnnnn ⓘ GSEnnnnn ⓘ GSMnnnnn ⓘ |
| hostedOn | NCBI servers NERFINISHED ⓘ |
| license | free public access ⓘ |
| linkedTo |
NCBI Gene database
NERFINISHED
ⓘ
NCBI PubMed NERFINISHED ⓘ NCBI SRA NERFINISHED ⓘ |
| locatedIn | Bethesda, Maryland ⓘ |
| maintainedBy | National Center for Biotechnology Information NERFINISHED ⓘ |
| operatedBy | NCBI NERFINISHED ⓘ |
| partOf | NCBI Gene Expression Omnibus NERFINISHED ⓘ |
| primaryUse |
benchmarking of bioinformatics methods
ⓘ
hypothesis generation ⓘ meta-analysis of gene expression ⓘ secondary analysis of public genomics data ⓘ |
| qualityControl |
basic validation checks
ⓘ
curatorial review for curated DataSets ⓘ |
| storesDataType |
ChIP-Seq data
ⓘ
RNA-Seq data ⓘ gene expression data ⓘ methylation data ⓘ microarray data ⓘ other functional genomics data ⓘ |
| subjectOf |
functional genomics
ⓘ
gene expression profiling ⓘ |
| supportsOrganism |
Arabidopsis thaliana
NERFINISHED
ⓘ
Drosophila melanogaster NERFINISHED ⓘ Homo sapiens NERFINISHED ⓘ Mus musculus NERFINISHED ⓘ Rattus norvegicus NERFINISHED ⓘ Saccharomyces cerevisiae NERFINISHED ⓘ many other species ⓘ |
| usedIn |
biomarker discovery
ⓘ
disease classification studies ⓘ drug response studies ⓘ transcriptomics research ⓘ |
Referenced by (1)
Full triples — surface form annotated when it differs from this entity's canonical label.