Triple
T9807359
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | programmed death-ligand 1 |
E238185
|
entity |
| Predicate | encodedByGene |
P90097
|
FINISHED |
| Object | CD274 gene |
E238185
|
NE FINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: CD274 gene | Statement: [programmed death-ligand 1, encodedByGene, CD274 gene]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: CD274 gene Context triple: [programmed death-ligand 1, encodedByGene, CD274 gene]
-
A.
programmed death-ligand 1
chosen
Programmed death-ligand 1 (PD-L1) is an immune checkpoint protein expressed on various cells that suppresses T-cell activity by engaging PD-1, enabling tumors to evade immune surveillance.
-
B.
CDK4
CDK4 is a cyclin-dependent kinase that regulates cell cycle progression and is a key therapeutic target in certain cancers.
-
C.
IL-64
IL-64 is a major east–west state highway in Illinois that runs from the Mississippi River through the Chicago metropolitan area.
-
D.
CDK6
CDK6 is a cyclin-dependent kinase that regulates cell cycle progression and is a key target in certain cancer therapies.
-
E.
IL-17A
IL-17A is a pro-inflammatory cytokine produced mainly by Th17 cells that plays a key role in the pathogenesis of several autoimmune and inflammatory diseases.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: encodedByGene Context triple: [programmed death-ligand 1, encodedByGene, CD274 gene]
-
A.
geneType
Indicates the specific category or classification of a gene based on its functional or structural characteristics.
-
B.
targetsGene
Indicates that one entity is directed toward, acts upon, or is intended to affect a specific gene.
-
C.
geneSymbol
Indicates the standardized short-form symbol assigned to a specific gene.
-
D.
geneticElement
Indicates that one entity is a genetic element (such as a gene, sequence, or structural unit of genetic material) associated with or characterized by the other entity.
-
E.
EnsemblGeneID
Indicates a relationship that assigns or associates a biological entity (such as a gene) with its unique Ensembl gene identifier.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69ca84defac48190abc1148804f184c1 |
completed | March 30, 2026, 2:12 p.m. |
| NER | Named-entity recognition | batch_69cdab7ddaac8190a5584a5c863fbaa3 |
completed | April 1, 2026, 11:34 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69d1cc57119881909616d835def02fc9 |
completed | April 5, 2026, 2:43 a.m. |
| PD | Predicate disambiguation | batch_69cd03dd2da881909052fbf29736a773 |
completed | April 1, 2026, 11:39 a.m. |
| PDg | Predicate description generation | batch_69cd06abc9248190a506b64e9c516d03 |
completed | April 1, 2026, 11:51 a.m. |
Created at: March 30, 2026, 8:29 p.m.