Triple

T8482755

Position	Surface form	Disambiguated ID	Type / Status
Subject	UniProt protein sequences	`E200557`	entity
Predicate	maintainedBy	`P86`	FINISHED
Object	Swiss Institute of Bioinformatics The Swiss Institute of Bioinformatics is a leading academic non-profit organization that develops and maintains major bioinformatics resources and tools for the global life sciences community.	`E736817`	NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini

Instruction

Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).

Input

Phrase: Swiss Institute of Bioinformatics | Statement: [UniProt protein sequences, maintainedBy, Swiss Institute of Bioinformatics]

NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07

Target entity: Swiss Institute of Bioinformatics
Context triple: [UniProt protein sequences, maintainedBy, Swiss Institute of Bioinformatics]

A. European Bioinformatics Institute
The European Bioinformatics Institute (EMBL-EBI) is a major international research center that develops and hosts biological data resources and tools to support life science research worldwide.
B. Centre for Genomics and Bioinformatics
The Centre for Genomics and Bioinformatics is a specialized research unit focused on applying genomic and bioinformatic methods to study public health–relevant pathogens and diseases.
C. Luxembourg Centre for Systems Biomedicine
The Luxembourg Centre for Systems Biomedicine is a research institute specializing in interdisciplinary, systems-level approaches to understanding human diseases, particularly in areas like neurodegeneration and personalized medicine.
D. Adolphe Merkle Institute
Adolphe Merkle Institute is a Swiss research center at the University of Fribourg specializing in interdisciplinary nanoscience and materials science.
E. Swiss National Science Foundation
The Swiss National Science Foundation is Switzerland’s principal research funding organization, supporting scientific projects and researchers across all disciplines.
F. None of above. chosen
G. Unsure - the case is ambiguous/there is not enough information to decide.

NEDg Description generation gpt-5.1

Instruction

Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"

Input

Entity: Swiss Institute of Bioinformatics
Triple: [UniProt protein sequences, maintainedBy, Swiss Institute of Bioinformatics]

Generated description

The Swiss Institute of Bioinformatics is a leading academic non-profit organization that develops and maintains major bioinformatics resources and tools for the global life sciences community.

NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07

Target entity: Swiss Institute of Bioinformatics
Target entity description: The Swiss Institute of Bioinformatics is a leading academic non-profit organization that develops and maintains major bioinformatics resources and tools for the global life sciences community.

A. European Bioinformatics Institute
The European Bioinformatics Institute (EMBL-EBI) is a major international research center that develops and hosts biological data resources and tools to support life science research worldwide.
B. Centre for Genomics and Bioinformatics
The Centre for Genomics and Bioinformatics is a specialized research unit focused on applying genomic and bioinformatic methods to study public health–relevant pathogens and diseases.
C. Luxembourg Centre for Systems Biomedicine
The Luxembourg Centre for Systems Biomedicine is a research institute specializing in interdisciplinary, systems-level approaches to understanding human diseases, particularly in areas like neurodegeneration and personalized medicine.
D. Adolphe Merkle Institute
Adolphe Merkle Institute is a Swiss research center at the University of Fribourg specializing in interdisciplinary nanoscience and materials science.
E. Swiss National Science Foundation
The Swiss National Science Foundation is Switzerland’s principal research funding organization, supporting scientific projects and researchers across all disciplines.
F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step	Stage	Batch ID	Status	When
creating	Elicitation	`batch_69ca831b17988190a1f3f3413d57b820`	completed	March 30, 2026, 2:05 p.m.
NER	Named-entity recognition	`batch_69cbe53845e881909eeb32863c7aa942`	completed	March 31, 2026, 3:16 p.m.
NED1	Entity disambiguation (via context triple)	`batch_69ce3a2b2e9081909f19712946c6ec20`	completed	April 2, 2026, 9:43 a.m.
NEDg	Description generation	`batch_69ce3b4008a0819096bb44b46f510213`	completed	April 2, 2026, 9:47 a.m.
NED2	Entity disambiguation (via description)	`batch_69ce3c000e608190adf1b6499d382529`	completed	April 2, 2026, 9:50 a.m.

Created at: March 30, 2026, 6:12 p.m.