Triple

T8482753
Position Surface form Disambiguated ID Type / Status
Subject UniProt protein sequences E200557 entity
Predicate curatedBy P5107 FINISHED
Object UniProt Consortium
The UniProt Consortium is an international collaboration of bioinformatics organizations responsible for maintaining and curating the UniProt protein sequence and functional annotation database.
 E736816 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: UniProt Consortium | Statement: [UniProt protein sequences, curatedBy, UniProt Consortium]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: UniProt Consortium
Context triple: [UniProt protein sequences, curatedBy, UniProt Consortium]
  • A. UniProt protein sequences
    UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
  • B. European Bioinformatics Institute
    The European Bioinformatics Institute (EMBL-EBI) is a major international research center that develops and hosts biological data resources and tools to support life science research worldwide.
  • C. Protein Data Bank
    The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.
  • D. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • E. Protein database
    The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: UniProt Consortium
Triple: [UniProt protein sequences, curatedBy, UniProt Consortium]
Generated description
The UniProt Consortium is an international collaboration of bioinformatics organizations responsible for maintaining and curating the UniProt protein sequence and functional annotation database.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07 
Target entity: UniProt Consortium
Target entity description: The UniProt Consortium is an international collaboration of bioinformatics organizations responsible for maintaining and curating the UniProt protein sequence and functional annotation database.
  • A. UniProt protein sequences
    UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
  • B. European Bioinformatics Institute
    The European Bioinformatics Institute (EMBL-EBI) is a major international research center that develops and hosts biological data resources and tools to support life science research worldwide.
  • C. Protein Data Bank
    The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.
  • D. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • E. Protein database
    The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69ca831b17988190a1f3f3413d57b820 completed March 30, 2026, 2:05 p.m.
NER Named-entity recognition batch_69cbe53845e881909eeb32863c7aa942 completed March 31, 2026, 3:16 p.m.
NED1 Entity disambiguation (via context triple) batch_69ce3a2b2e9081909f19712946c6ec20 completed April 2, 2026, 9:43 a.m.
NEDg Description generation batch_69ce3b4008a0819096bb44b46f510213 completed April 2, 2026, 9:47 a.m.
NED2 Entity disambiguation (via description) batch_69ce3c000e608190adf1b6499d382529 completed April 2, 2026, 9:50 a.m.
Created at: March 30, 2026, 6:12 p.m.