Triple
T8482524
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Protein Data Bank |
E200553
|
entity |
| Predicate | hasFullName |
P16
|
FINISHED |
| Object | Worldwide Protein Data Bank |
E200553
|
NE FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Worldwide Protein Data Bank | Statement: [Protein Data Bank, hasFullName, Worldwide Protein Data Bank]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Worldwide Protein Data Bank Context triple: [Protein Data Bank, hasFullName, Worldwide Protein Data Bank]
-
A.
Protein Data Bank
chosen
The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.
-
B.
EMBL-EBI AlphaFold Protein Structure Database
The EMBL-EBI AlphaFold Protein Structure Database is a publicly accessible resource providing predicted 3D structures of proteins generated by DeepMind’s AlphaFold system.
-
C.
PDB
PDB (Program Database) is a file format used by Microsoft development tools to store debugging and project state information for compiled programs.
-
D.
World Directory of Crystallographers
The World Directory of Crystallographers is a comprehensive international reference listing professional crystallographers and related scientists, often used to facilitate collaboration and communication within the crystallography community.
-
E.
Crystallographic Information Framework
The Crystallographic Information Framework is a standardized data format and ontology used worldwide for representing, exchanging, and archiving crystallographic and related structural science data.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69ca831b17988190a1f3f3413d57b820 |
completed | March 30, 2026, 2:05 p.m. |
| NER | Named-entity recognition | batch_69cbe53638c48190b742fc51d1b4442a |
completed | March 31, 2026, 3:16 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69ce3a2b2e9081909f19712946c6ec20 |
completed | April 2, 2026, 9:43 a.m. |
Created at: March 30, 2026, 6:12 p.m.