Triple
T8372289
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Huntington's chorea |
E197487
|
entity |
| Predicate | hasGeneticBasisIn |
P78758
|
FINISHED |
| Object |
HTT gene
The HTT gene encodes the huntingtin protein, and mutations in this gene—particularly CAG trinucleotide repeat expansions—cause Huntington's disease, a progressive neurodegenerative disorder.
|
E730391
|
NE FINISHED |
How this triple was built (5 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: HTT gene | Statement: [Huntington's chorea, hasGeneticBasisIn, HTT gene]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: HTT gene Context triple: [Huntington's chorea, hasGeneticBasisIn, HTT gene]
-
A.
HDY
HDY is the IATA airport code for Hat Yai International Airport in southern Thailand, a key regional hub serving the city of Hat Yai and the surrounding area.
-
B.
SMN2
SMN2 is a human gene that produces a backup form of survival motor neuron protein and is a key therapeutic target in spinal muscular atrophy.
-
C.
C9orf72
C9orf72 is a human gene whose hexanucleotide repeat expansions are the most common known genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
-
D.
APOE gene
The APOE gene encodes apolipoprotein E, a key protein in lipid metabolism whose variants, especially ε4, strongly influence risk for Alzheimer’s disease and cardiovascular disorders.
-
E.
SMN1 gene
The SMN1 gene is a human gene whose proper function is critical for motor neuron survival, and mutations in it are the primary cause of spinal muscular atrophy.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: HTT gene Triple: [Huntington's chorea, hasGeneticBasisIn, HTT gene]
Generated description
The HTT gene encodes the huntingtin protein, and mutations in this gene—particularly CAG trinucleotide repeat expansions—cause Huntington's disease, a progressive neurodegenerative disorder.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: HTT gene Target entity description: The HTT gene encodes the huntingtin protein, and mutations in this gene—particularly CAG trinucleotide repeat expansions—cause Huntington's disease, a progressive neurodegenerative disorder.
-
A.
HDY
HDY is the IATA airport code for Hat Yai International Airport in southern Thailand, a key regional hub serving the city of Hat Yai and the surrounding area.
-
B.
SMN2
SMN2 is a human gene that produces a backup form of survival motor neuron protein and is a key therapeutic target in spinal muscular atrophy.
-
C.
C9orf72
C9orf72 is a human gene whose hexanucleotide repeat expansions are the most common known genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
-
D.
APOE gene
The APOE gene encodes apolipoprotein E, a key protein in lipid metabolism whose variants, especially ε4, strongly influence risk for Alzheimer’s disease and cardiovascular disorders.
-
E.
SMN1 gene
The SMN1 gene is a human gene whose proper function is critical for motor neuron survival, and mutations in it are the primary cause of spinal muscular atrophy.
- F. None of above. chosen
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: hasGeneticBasisIn Context triple: [Huntington's chorea, hasGeneticBasisIn, HTT gene]
-
A.
hasGeneticEvidence
Indicates that there is genetic data or analysis supporting the existence, validity, or nature of the specified relationship or association between entities.
-
B.
hasGeneticLocus
chosen
Indicates that a genetic feature or trait is located at, or associated with, a specific position (locus) on a genome or chromosome.
-
C.
geneticInfluence
Indicates that one entity affects or contributes to the genetic traits, characteristics, or heredity of another entity.
-
D.
geneticStatus
Indicates the genetic condition or variant state an entity has in relation to a specific gene or set of genes.
-
E.
hasGeneticAffiliation
Indicates that one entity is genetically related or affiliated with another, such as sharing ancestry, lineage, or genetic characteristics.
- F. None of above.
Provenance (6 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69ca82f56730819080cec5d991c76f4c |
completed | March 30, 2026, 2:04 p.m. |
| NER | Named-entity recognition | batch_69cb80a6944081909c4547688c9e70ae |
completed | March 31, 2026, 8:07 a.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69cde7dc7c6081909183716901fd2543 |
completed | April 2, 2026, 3:51 a.m. |
| NEDg | Description generation | batch_69cdebf81adc81908feb7b19b5b151c3 |
completed | April 2, 2026, 4:09 a.m. |
| NED2 | Entity disambiguation (via description) | batch_69cdecc83e408190b9ba1dc8acf5081b |
completed | April 2, 2026, 4:12 a.m. |
| PD | Predicate disambiguation | batch_69cb70cd04b08190ab5f72afd22a7967 |
completed | March 31, 2026, 6:59 a.m. |
Created at: March 30, 2026, 6:01 p.m.