Triple

T8372289
Position Surface form Disambiguated ID Type / Status
Subject Huntington's chorea E197487 entity
Predicate hasGeneticBasisIn P78758 FINISHED
Object HTT gene
The HTT gene encodes the huntingtin protein, and mutations in this gene—particularly CAG trinucleotide repeat expansions—cause Huntington's disease, a progressive neurodegenerative disorder.
E730391 NE FINISHED

How this triple was built (5 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: HTT gene | Statement: [Huntington's chorea, hasGeneticBasisIn, HTT gene]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: HTT gene
Context triple: [Huntington's chorea, hasGeneticBasisIn, HTT gene]
  • A. HDY
    HDY is the IATA airport code for Hat Yai International Airport in southern Thailand, a key regional hub serving the city of Hat Yai and the surrounding area.
  • B. SMN2
    SMN2 is a human gene that produces a backup form of survival motor neuron protein and is a key therapeutic target in spinal muscular atrophy.
  • C. C9orf72
    C9orf72 is a human gene whose hexanucleotide repeat expansions are the most common known genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
  • D. APOE gene
    The APOE gene encodes apolipoprotein E, a key protein in lipid metabolism whose variants, especially ε4, strongly influence risk for Alzheimer’s disease and cardiovascular disorders.
  • E. SMN1 gene
    The SMN1 gene is a human gene whose proper function is critical for motor neuron survival, and mutations in it are the primary cause of spinal muscular atrophy.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: HTT gene
Triple: [Huntington's chorea, hasGeneticBasisIn, HTT gene]
Generated description
The HTT gene encodes the huntingtin protein, and mutations in this gene—particularly CAG trinucleotide repeat expansions—cause Huntington's disease, a progressive neurodegenerative disorder.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: HTT gene
Target entity description: The HTT gene encodes the huntingtin protein, and mutations in this gene—particularly CAG trinucleotide repeat expansions—cause Huntington's disease, a progressive neurodegenerative disorder.
  • A. HDY
    HDY is the IATA airport code for Hat Yai International Airport in southern Thailand, a key regional hub serving the city of Hat Yai and the surrounding area.
  • B. SMN2
    SMN2 is a human gene that produces a backup form of survival motor neuron protein and is a key therapeutic target in spinal muscular atrophy.
  • C. C9orf72
    C9orf72 is a human gene whose hexanucleotide repeat expansions are the most common known genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
  • D. APOE gene
    The APOE gene encodes apolipoprotein E, a key protein in lipid metabolism whose variants, especially ε4, strongly influence risk for Alzheimer’s disease and cardiovascular disorders.
  • E. SMN1 gene
    The SMN1 gene is a human gene whose proper function is critical for motor neuron survival, and mutations in it are the primary cause of spinal muscular atrophy.
  • F. None of above. chosen
PD Predicate disambiguation gpt-5-mini-2025-08-07
Target predicate: hasGeneticBasisIn
Context triple: [Huntington's chorea, hasGeneticBasisIn, HTT gene]
  • A. hasGeneticEvidence
    Indicates that there is genetic data or analysis supporting the existence, validity, or nature of the specified relationship or association between entities.
  • B. hasGeneticLocus chosen
    Indicates that a genetic feature or trait is located at, or associated with, a specific position (locus) on a genome or chromosome.
  • C. geneticInfluence
    Indicates that one entity affects or contributes to the genetic traits, characteristics, or heredity of another entity.
  • D. geneticStatus
    Indicates the genetic condition or variant state an entity has in relation to a specific gene or set of genes.
  • E. hasGeneticAffiliation
    Indicates that one entity is genetically related or affiliated with another, such as sharing ancestry, lineage, or genetic characteristics.
  • F. None of above.

Provenance (6 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69ca82f56730819080cec5d991c76f4c completed March 30, 2026, 2:04 p.m.
NER Named-entity recognition batch_69cb80a6944081909c4547688c9e70ae completed March 31, 2026, 8:07 a.m.
NED1 Entity disambiguation (via context triple) batch_69cde7dc7c6081909183716901fd2543 completed April 2, 2026, 3:51 a.m.
NEDg Description generation batch_69cdebf81adc81908feb7b19b5b151c3 completed April 2, 2026, 4:09 a.m.
NED2 Entity disambiguation (via description) batch_69cdecc83e408190b9ba1dc8acf5081b completed April 2, 2026, 4:12 a.m.
PD Predicate disambiguation batch_69cb70cd04b08190ab5f72afd22a7967 completed March 31, 2026, 6:59 a.m.
Created at: March 30, 2026, 6:01 p.m.