Triple
T7277846
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | OWL 2 EL |
E163073
|
entity |
| Predicate | usedIn |
P98
|
FINISHED |
| Object |
Gene Ontology (GO)
Gene Ontology (GO) is a major bioinformatics initiative that provides a structured, controlled vocabulary to describe gene and gene product attributes across species in terms of their molecular functions, biological processes, and cellular components.
|
E653881
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Gene Ontology (GO) | Statement: [OWL 2 EL, usedIn, Gene Ontology (GO)]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Gene Ontology (GO) Context triple: [OWL 2 EL, usedIn, Gene Ontology (GO)]
-
A.
Taxonomy Browser
Taxonomy Browser is an online NCBI tool that allows users to explore and retrieve information about the classification and nomenclature of organisms across the tree of life.
-
B.
MeSH
MeSH (Medical Subject Headings) is a comprehensive controlled vocabulary thesaurus used for indexing, cataloging, and searching biomedical and health-related information.
-
C.
RefSeq
RefSeq is a curated, non-redundant collection of reference DNA, RNA, and protein sequences maintained by the National Center for Biotechnology Information for use in genome annotation and biological research.
-
D.
Genes and Signals
Genes and Signals is a molecular biology book by Mark Ptashne that explains how genes are regulated through signaling pathways and protein-DNA interactions.
-
E.
FlyBase
FlyBase is a comprehensive online database of genetic and genomic information for the fruit fly Drosophila and related species.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Gene Ontology (GO) Triple: [OWL 2 EL, usedIn, Gene Ontology (GO)]
Generated description
Gene Ontology (GO) is a major bioinformatics initiative that provides a structured, controlled vocabulary to describe gene and gene product attributes across species in terms of their molecular functions, biological processes, and cellular components.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Gene Ontology (GO) Target entity description: Gene Ontology (GO) is a major bioinformatics initiative that provides a structured, controlled vocabulary to describe gene and gene product attributes across species in terms of their molecular functions, biological processes, and cellular components.
-
A.
Taxonomy Browser
Taxonomy Browser is an online NCBI tool that allows users to explore and retrieve information about the classification and nomenclature of organisms across the tree of life.
-
B.
MeSH
MeSH (Medical Subject Headings) is a comprehensive controlled vocabulary thesaurus used for indexing, cataloging, and searching biomedical and health-related information.
-
C.
RefSeq
RefSeq is a curated, non-redundant collection of reference DNA, RNA, and protein sequences maintained by the National Center for Biotechnology Information for use in genome annotation and biological research.
-
D.
Genes and Signals
Genes and Signals is a molecular biology book by Mark Ptashne that explains how genes are regulated through signaling pathways and protein-DNA interactions.
-
E.
FlyBase
FlyBase is a comprehensive online database of genetic and genomic information for the fruit fly Drosophila and related species.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69c6885c5964819085b209701769877f |
completed | March 27, 2026, 1:38 p.m. |
| NER | Named-entity recognition | batch_69c6eb309a648190a2a2f2cca9ce2f56 |
completed | March 27, 2026, 8:40 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69c7db3110688190bf52180ea159c91c |
completed | March 28, 2026, 1:44 p.m. |
| NEDg | Description generation | batch_69c7dbf65fb08190ae8a9c4e57d42e97 |
completed | March 28, 2026, 1:47 p.m. |
| NED2 | Entity disambiguation (via description) | batch_69c7dc6873a081908ea4e953430ec20b |
completed | March 28, 2026, 1:49 p.m. |
Created at: March 27, 2026, 2:59 p.m.