Triple

T7277846
Position Surface form Disambiguated ID Type / Status
Subject OWL 2 EL E163073 entity
Predicate usedIn P98 FINISHED
Object Gene Ontology (GO)
Gene Ontology (GO) is a major bioinformatics initiative that provides a structured, controlled vocabulary to describe gene and gene product attributes across species in terms of their molecular functions, biological processes, and cellular components.
E653881 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Gene Ontology (GO) | Statement: [OWL 2 EL, usedIn, Gene Ontology (GO)]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: Gene Ontology (GO)
Context triple: [OWL 2 EL, usedIn, Gene Ontology (GO)]
  • A. Taxonomy Browser
    Taxonomy Browser is an online NCBI tool that allows users to explore and retrieve information about the classification and nomenclature of organisms across the tree of life.
  • B. MeSH
    MeSH (Medical Subject Headings) is a comprehensive controlled vocabulary thesaurus used for indexing, cataloging, and searching biomedical and health-related information.
  • C. RefSeq
    RefSeq is a curated, non-redundant collection of reference DNA, RNA, and protein sequences maintained by the National Center for Biotechnology Information for use in genome annotation and biological research.
  • D. Genes and Signals
    Genes and Signals is a molecular biology book by Mark Ptashne that explains how genes are regulated through signaling pathways and protein-DNA interactions.
  • E. FlyBase
    FlyBase is a comprehensive online database of genetic and genomic information for the fruit fly Drosophila and related species.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Gene Ontology (GO)
Triple: [OWL 2 EL, usedIn, Gene Ontology (GO)]
Generated description
Gene Ontology (GO) is a major bioinformatics initiative that provides a structured, controlled vocabulary to describe gene and gene product attributes across species in terms of their molecular functions, biological processes, and cellular components.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: Gene Ontology (GO)
Target entity description: Gene Ontology (GO) is a major bioinformatics initiative that provides a structured, controlled vocabulary to describe gene and gene product attributes across species in terms of their molecular functions, biological processes, and cellular components.
  • A. Taxonomy Browser
    Taxonomy Browser is an online NCBI tool that allows users to explore and retrieve information about the classification and nomenclature of organisms across the tree of life.
  • B. MeSH
    MeSH (Medical Subject Headings) is a comprehensive controlled vocabulary thesaurus used for indexing, cataloging, and searching biomedical and health-related information.
  • C. RefSeq
    RefSeq is a curated, non-redundant collection of reference DNA, RNA, and protein sequences maintained by the National Center for Biotechnology Information for use in genome annotation and biological research.
  • D. Genes and Signals
    Genes and Signals is a molecular biology book by Mark Ptashne that explains how genes are regulated through signaling pathways and protein-DNA interactions.
  • E. FlyBase
    FlyBase is a comprehensive online database of genetic and genomic information for the fruit fly Drosophila and related species.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69c6885c5964819085b209701769877f completed March 27, 2026, 1:38 p.m.
NER Named-entity recognition batch_69c6eb309a648190a2a2f2cca9ce2f56 completed March 27, 2026, 8:40 p.m.
NED1 Entity disambiguation (via context triple) batch_69c7db3110688190bf52180ea159c91c completed March 28, 2026, 1:44 p.m.
NEDg Description generation batch_69c7dbf65fb08190ae8a9c4e57d42e97 completed March 28, 2026, 1:47 p.m.
NED2 Entity disambiguation (via description) batch_69c7dc6873a081908ea4e953430ec20b completed March 28, 2026, 1:49 p.m.
Created at: March 27, 2026, 2:59 p.m.