Triple
T6098386
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | NCBI E-utilities API |
E135932
|
entity |
| Predicate | providesAccessTo |
P1985
|
FINISHED |
| Object |
BioSample database
The BioSample database is an NCBI repository that stores and organizes metadata about biological samples used in genomic and other molecular research studies.
|
E570179
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: BioSample database | Statement: [NCBI E-utilities API, providesAccessTo, BioSample database]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: BioSample database Context triple: [NCBI E-utilities API, providesAccessTo, BioSample database]
-
A.
BioProject database
The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
-
B.
GEO DataSets
GEO DataSets is a public NCBI repository that organizes and provides access to curated gene expression and other functional genomics experiment data.
-
C.
Hannover Unified Biobank
Hannover Unified Biobank is a centralized biomedical research biobank that collects, processes, and stores human biological samples and associated data to support translational and clinical research.
-
D.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
E.
Cambridge Blood and Stem Cell Biobank
The Cambridge Blood and Stem Cell Biobank is a major research facility that collects, processes, and stores human blood and stem cell samples to support biomedical and translational research.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: BioSample database Triple: [NCBI E-utilities API, providesAccessTo, BioSample database]
Generated description
The BioSample database is an NCBI repository that stores and organizes metadata about biological samples used in genomic and other molecular research studies.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: BioSample database Target entity description: The BioSample database is an NCBI repository that stores and organizes metadata about biological samples used in genomic and other molecular research studies.
-
A.
BioProject database
The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
-
B.
GEO DataSets
GEO DataSets is a public NCBI repository that organizes and provides access to curated gene expression and other functional genomics experiment data.
-
C.
Hannover Unified Biobank
Hannover Unified Biobank is a centralized biomedical research biobank that collects, processes, and stores human biological samples and associated data to support translational and clinical research.
-
D.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
E.
Cambridge Blood and Stem Cell Biobank
The Cambridge Blood and Stem Cell Biobank is a major research facility that collects, processes, and stores human blood and stem cell samples to support biomedical and translational research.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69c0087cd3c48190b459848c72d84eb1 |
completed | March 22, 2026, 3:19 p.m. |
| NER | Named-entity recognition | batch_69c05a9a02888190ac201acd14c3fc31 |
completed | March 22, 2026, 9:09 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69c1358d0e18819084e2acb9e75271b4 |
completed | March 23, 2026, 12:43 p.m. |
| NEDg | Description generation | batch_69c1362a78548190b3ccbc9089821b40 |
completed | March 23, 2026, 12:46 p.m. |
| NED2 | Entity disambiguation (via description) | batch_69c1368d452c8190bc713c0f508250a8 |
completed | March 23, 2026, 12:48 p.m. |
Created at: March 22, 2026, 4:12 p.m.