Triple
T6098385
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | NCBI E-utilities API |
E135932
|
entity |
| Predicate | providesAccessTo |
P1985
|
FINISHED |
| Object | BioProject database |
E569120
|
NE FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: BioProject database | Statement: [NCBI E-utilities API, providesAccessTo, BioProject database]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: BioProject database Context triple: [NCBI E-utilities API, providesAccessTo, BioProject database]
-
A.
BioProject database
chosen
The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
-
B.
Protein database
The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
-
C.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
D.
GEO DataSets
GEO DataSets is a public NCBI repository that organizes and provides access to curated gene expression and other functional genomics experiment data.
-
E.
National Center for Biotechnology Information
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69c0087cd3c48190b459848c72d84eb1 |
completed | March 22, 2026, 3:19 p.m. |
| NER | Named-entity recognition | batch_69c05a9a02888190ac201acd14c3fc31 |
completed | March 22, 2026, 9:09 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69c1358d0e18819084e2acb9e75271b4 |
completed | March 23, 2026, 12:43 p.m. |
Created at: March 22, 2026, 4:12 p.m.