Triple

T6098380
Position Surface form Disambiguated ID Type / Status
Subject NCBI E-utilities API E135932 entity
Predicate providesAccessTo P1985 FINISHED
Object Protein database
The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
E569466 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Protein database | Statement: [NCBI E-utilities API, providesAccessTo, Protein database]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: Protein database
Context triple: [NCBI E-utilities API, providesAccessTo, Protein database]
  • A. UniProt protein sequences
    UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
  • B. EMBL-EBI AlphaFold Protein Structure Database
    The EMBL-EBI AlphaFold Protein Structure Database is a publicly accessible resource providing predicted 3D structures of proteins generated by DeepMind’s AlphaFold system.
  • C. Protein Data Bank
    The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.
  • D. NCBI E-utilities API
    The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
  • E. DBIO
    DBIO is the Division of Biological Physics within the American Physical Society, focusing on research at the interface of physics and the life sciences.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Protein database
Triple: [NCBI E-utilities API, providesAccessTo, Protein database]
Generated description
The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: Protein database
Target entity description: The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
  • A. UniProt protein sequences
    UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
  • B. BioProject database
    The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
  • C. EMBL-EBI AlphaFold Protein Structure Database
    The EMBL-EBI AlphaFold Protein Structure Database is a publicly accessible resource providing predicted 3D structures of proteins generated by DeepMind’s AlphaFold system.
  • D. Protein Data Bank
    The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.
  • E. NCBI E-utilities API
    The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69c0087cd3c48190b459848c72d84eb1 completed March 22, 2026, 3:19 p.m.
NER Named-entity recognition batch_69c05a9a02888190ac201acd14c3fc31 completed March 22, 2026, 9:09 p.m.
NED1 Entity disambiguation (via context triple) batch_69c125475548819086b733a80056eba5 completed March 23, 2026, 11:34 a.m.
NEDg Description generation batch_69c128753cd8819096edb3c817bfae10 completed March 23, 2026, 11:48 a.m.
NED2 Entity disambiguation (via description) batch_69c129134ce08190ada54a7b3eda27f4 completed March 23, 2026, 11:50 a.m.
Created at: March 22, 2026, 4:12 p.m.