Triple

T6098301
Position Surface form Disambiguated ID Type / Status
Subject Entrez system E135930 entity
Predicate hasPart P35 FINISHED
Object UniGene database
The UniGene database is a now-retired NCBI resource that organized expressed sequence tags and other gene-oriented sequence data into non-redundant clusters representing unique genes in a given organism.
E569464 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: UniGene database | Statement: [Entrez system, hasPart, UniGene database]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: UniGene database
Context triple: [Entrez system, hasPart, UniGene database]
  • A. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • B. NCBI E-utilities API
    The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
  • C. Edico Genome
    Edico Genome was a biotechnology company specializing in high-speed genomic data analysis through its DRAGEN bio-IT platform and FPGA-based acceleration technology.
  • D. UniProt protein sequences
    UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
  • E. DBIO
    DBIO is the Division of Biological Physics within the American Physical Society, focusing on research at the interface of physics and the life sciences.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: UniGene database
Triple: [Entrez system, hasPart, UniGene database]
Generated description
The UniGene database is a now-retired NCBI resource that organized expressed sequence tags and other gene-oriented sequence data into non-redundant clusters representing unique genes in a given organism.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: UniGene database
Target entity description: The UniGene database is a now-retired NCBI resource that organized expressed sequence tags and other gene-oriented sequence data into non-redundant clusters representing unique genes in a given organism.
  • A. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • B. BioProject database
    The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
  • C. RefSeq
    RefSeq is a curated, non-redundant collection of reference DNA, RNA, and protein sequences maintained by the National Center for Biotechnology Information for use in genome annotation and biological research.
  • D. NCBI E-utilities API
    The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
  • E. Edico Genome
    Edico Genome was a biotechnology company specializing in high-speed genomic data analysis through its DRAGEN bio-IT platform and FPGA-based acceleration technology.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69c0087cd3c48190b459848c72d84eb1 completed March 22, 2026, 3:19 p.m.
NER Named-entity recognition batch_69c05a9a02888190ac201acd14c3fc31 completed March 22, 2026, 9:09 p.m.
NED1 Entity disambiguation (via context triple) batch_69c125475548819086b733a80056eba5 completed March 23, 2026, 11:34 a.m.
NEDg Description generation batch_69c128753cd8819096edb3c817bfae10 completed March 23, 2026, 11:48 a.m.
NED2 Entity disambiguation (via description) batch_69c129134ce08190ada54a7b3eda27f4 completed March 23, 2026, 11:50 a.m.
Created at: March 22, 2026, 4:12 p.m.