Triple

T6098290
Position Surface form Disambiguated ID Type / Status
Subject Entrez system E135930 entity
Predicate hasPart P35 FINISHED
Object Conserved Domain Database
The Conserved Domain Database is an NCBI-curated resource that catalogs and annotates conserved protein domains to support functional and evolutionary analysis of protein sequences.
E570177 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Conserved Domain Database | Statement: [Entrez system, hasPart, Conserved Domain Database]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: Conserved Domain Database
Context triple: [Entrez system, hasPart, Conserved Domain Database]
  • A. UniGene database
    The UniGene database is a now-retired NCBI resource that organized expressed sequence tags and other gene-oriented sequence data into non-redundant clusters representing unique genes in a given organism.
  • B. Protein Data Bank
    The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.
  • C. Protein database
    The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
  • D. EMBL-EBI AlphaFold Protein Structure Database
    The EMBL-EBI AlphaFold Protein Structure Database is a publicly accessible resource providing predicted 3D structures of proteins generated by DeepMind’s AlphaFold system.
  • E. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Conserved Domain Database
Triple: [Entrez system, hasPart, Conserved Domain Database]
Generated description
The Conserved Domain Database is an NCBI-curated resource that catalogs and annotates conserved protein domains to support functional and evolutionary analysis of protein sequences.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: Conserved Domain Database
Target entity description: The Conserved Domain Database is an NCBI-curated resource that catalogs and annotates conserved protein domains to support functional and evolutionary analysis of protein sequences.
  • A. UniGene database
    The UniGene database is a now-retired NCBI resource that organized expressed sequence tags and other gene-oriented sequence data into non-redundant clusters representing unique genes in a given organism.
  • B. Protein Data Bank
    The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.
  • C. Protein database
    The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
  • D. EMBL-EBI AlphaFold Protein Structure Database
    The EMBL-EBI AlphaFold Protein Structure Database is a publicly accessible resource providing predicted 3D structures of proteins generated by DeepMind’s AlphaFold system.
  • E. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69c0087cd3c48190b459848c72d84eb1 completed March 22, 2026, 3:19 p.m.
NER Named-entity recognition batch_69c05a9a02888190ac201acd14c3fc31 completed March 22, 2026, 9:09 p.m.
NED1 Entity disambiguation (via context triple) batch_69c1358d0e18819084e2acb9e75271b4 completed March 23, 2026, 12:43 p.m.
NEDg Description generation batch_69c1362a78548190b3ccbc9089821b40 completed March 23, 2026, 12:46 p.m.
NED2 Entity disambiguation (via description) batch_69c1368d452c8190bc713c0f508250a8 completed March 23, 2026, 12:48 p.m.
Created at: March 22, 2026, 4:12 p.m.