Triple
T6098289
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Entrez system |
E135930
|
entity |
| Predicate | hasPart |
P35
|
FINISHED |
| Object | HomoloGene |
E135929
|
NE FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: HomoloGene | Statement: [Entrez system, hasPart, HomoloGene]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: HomoloGene Context triple: [Entrez system, hasPart, HomoloGene]
-
A.
HGNC:28350
HGNC:28350 is the HGNC gene identifier assigned to the human C9orf72 gene, which is notably associated with familial amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
-
B.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
C.
FlyBase
FlyBase is a comprehensive online database of genetic and genomic information for the fruit fly Drosophila and related species.
-
D.
National Center for Biotechnology Information
chosen
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
-
E.
UniProt protein sequences
UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69c0087cd3c48190b459848c72d84eb1 |
completed | March 22, 2026, 3:19 p.m. |
| NER | Named-entity recognition | batch_69c05a9a02888190ac201acd14c3fc31 |
completed | March 22, 2026, 9:09 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69c1254365708190b8feb95dfb2b730d |
completed | March 23, 2026, 11:34 a.m. |
Created at: March 22, 2026, 4:12 p.m.