Triple
T6098285
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Entrez system |
E135930
|
entity |
| Predicate | hasPart |
P35
|
FINISHED |
| Object | BioSample database |
E135929
|
NE FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: BioSample database | Statement: [Entrez system, hasPart, BioSample database]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: BioSample database Context triple: [Entrez system, hasPart, BioSample database]
-
A.
Hannover Unified Biobank
Hannover Unified Biobank is a centralized biomedical research biobank that collects, processes, and stores human biological samples and associated data to support translational and clinical research.
-
B.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
C.
Cambridge Blood and Stem Cell Biobank
The Cambridge Blood and Stem Cell Biobank is a major research facility that collects, processes, and stores human blood and stem cell samples to support biomedical and translational research.
-
D.
DBIO
DBIO is the Division of Biological Physics within the American Physical Society, focusing on research at the interface of physics and the life sciences.
-
E.
National Center for Biotechnology Information
chosen
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69c0087cd3c48190b459848c72d84eb1 |
completed | March 22, 2026, 3:19 p.m. |
| NER | Named-entity recognition | batch_69c05a9a02888190ac201acd14c3fc31 |
completed | March 22, 2026, 9:09 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69c1254365708190b8feb95dfb2b730d |
completed | March 23, 2026, 11:34 a.m. |
Created at: March 22, 2026, 4:12 p.m.