Triple
T6098251
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | National Center for Biotechnology Information |
E135929
|
entity |
| Predicate | hasService |
P182
|
FINISHED |
| Object |
Conserved Domain Database
The Conserved Domain Database is an NCBI resource that provides curated annotations of conserved protein domains to aid in the functional and evolutionary analysis of protein sequences.
|
E135929
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Conserved Domain Database | Statement: [National Center for Biotechnology Information, hasService, Conserved Domain Database]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Conserved Domain Database Context triple: [National Center for Biotechnology Information, hasService, Conserved Domain Database]
-
A.
Protein Data Bank
The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.
-
B.
EMBL-EBI AlphaFold Protein Structure Database
The EMBL-EBI AlphaFold Protein Structure Database is a publicly accessible resource providing predicted 3D structures of proteins generated by DeepMind’s AlphaFold system.
-
C.
National Center for Biotechnology Information
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
-
D.
BLAST
BLAST was the short-lived but influential literary and art magazine that served as the principal mouthpiece of the Vorticist movement in early 20th-century Britain.
-
E.
Global Biodiversity Information Facility
The Global Biodiversity Information Facility (GBIF) is an international open-data infrastructure that provides free access to biodiversity occurrence records from institutions and citizen-science projects worldwide.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Conserved Domain Database Triple: [National Center for Biotechnology Information, hasService, Conserved Domain Database]
Generated description
The Conserved Domain Database is an NCBI resource that provides curated annotations of conserved protein domains to aid in the functional and evolutionary analysis of protein sequences.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Conserved Domain Database Target entity description: The Conserved Domain Database is an NCBI resource that provides curated annotations of conserved protein domains to aid in the functional and evolutionary analysis of protein sequences.
-
A.
Protein Data Bank
The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.
-
B.
EMBL-EBI AlphaFold Protein Structure Database
The EMBL-EBI AlphaFold Protein Structure Database is a publicly accessible resource providing predicted 3D structures of proteins generated by DeepMind’s AlphaFold system.
-
C.
National Center for Biotechnology Information
chosen
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
-
D.
BLAST
BLAST was the short-lived but influential literary and art magazine that served as the principal mouthpiece of the Vorticist movement in early 20th-century Britain.
-
E.
Global Biodiversity Information Facility
The Global Biodiversity Information Facility (GBIF) is an international open-data infrastructure that provides free access to biodiversity occurrence records from institutions and citizen-science projects worldwide.
- F. None of above.
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69c0087cd3c48190b459848c72d84eb1 |
completed | March 22, 2026, 3:19 p.m. |
| NER | Named-entity recognition | batch_69c05a9a02888190ac201acd14c3fc31 |
completed | March 22, 2026, 9:09 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69c1254365708190b8feb95dfb2b730d |
completed | March 23, 2026, 11:34 a.m. |
| NEDg | Description generation | batch_69c125d888cc819092b765d47f1d9f9f |
completed | March 23, 2026, 11:36 a.m. |
| NED2 | Entity disambiguation (via description) | batch_69c126f308988190ab6cb6c79ea12877 |
completed | March 23, 2026, 11:41 a.m. |
Created at: March 22, 2026, 4:12 p.m.