Triple
T6065064
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | SMN2 |
E135135
|
entity |
| Predicate | paralogOf |
P68439
|
FINISHED |
| Object | SMN1 |
E561082
|
NE FINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: SMN1 | Statement: [SMN2, paralogOf, SMN1]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: SMN1 Context triple: [SMN2, paralogOf, SMN1]
-
A.
SMN1 gene
chosen
The SMN1 gene is a human gene whose proper function is critical for motor neuron survival, and mutations in it are the primary cause of spinal muscular atrophy.
-
B.
SMN2
SMN2 is a human gene that produces a backup form of survival motor neuron protein and is a key therapeutic target in spinal muscular atrophy.
-
C.
SMN complex
The SMN complex is a multiprotein assembly crucial for the biogenesis of small nuclear ribonucleoproteins (snRNPs) and proper pre-mRNA splicing, with key roles in motor neuron survival.
-
D.
5q13 (SMN1)
5q13 (SMN1) is a gene located on chromosome 5 whose proper function is critical for motor neuron survival and whose mutations are the primary cause of spinal muscular atrophy.
-
E.
SOD1
SOD1 is a gene encoding the antioxidant enzyme superoxide dismutase 1, whose mutations are a major known cause of familial amyotrophic lateral sclerosis (ALS).
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: paralogOf Context triple: [SMN2, paralogOf, SMN1]
-
A.
hasOrthologsWith
Indicates that two genes or proteins in different species are orthologous, meaning they originated from a common ancestral gene and typically retain similar functions.
-
B.
hasSynapomorphy
Indicates that two or more taxa share a derived character state inherited from their most recent common ancestor, distinguishing that clade from others.
-
C.
relatedSpeciesOrVariant
Indicates that one species or biological variant is taxonomically or genetically related to another.
-
D.
cognateOf
Indicates that two linguistic forms share a common historical origin, typically descending from the same ancestral word.
-
E.
hasCognate
Indicates that two linguistic forms in different languages share a common historical origin, typically descending from the same ancestral word.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69c00878d06881909ee78e88913bf890 |
completed | March 22, 2026, 3:19 p.m. |
| NER | Named-entity recognition | batch_69c05723c91c819090b4d4672e72f9f3 |
completed | March 22, 2026, 8:54 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69c1414ea324819087dc9267938efb5c |
completed | March 23, 2026, 1:34 p.m. |
| PD | Predicate disambiguation | batch_69c049f031408190b08b2766237c5dd0 |
completed | March 22, 2026, 7:58 p.m. |
| PDg | Predicate description generation | batch_69c04e8d4a148190bd8f95caae978e1b |
completed | March 22, 2026, 8:18 p.m. |
Created at: March 22, 2026, 4:10 p.m.