Triple
T6004856
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | SOD1 |
E133684
|
entity |
| Predicate | hasGeneProduct |
P3585
|
FINISHED |
| Object | SOD1 protein |
E133684
|
NE FINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: SOD1 protein | Statement: [SOD1, hasGeneProduct, SOD1 protein]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: SOD1 protein Context triple: [SOD1, hasGeneProduct, SOD1 protein]
-
A.
SOD1
chosen
SOD1 is a gene encoding the antioxidant enzyme superoxide dismutase 1, whose mutations are a major known cause of familial amyotrophic lateral sclerosis (ALS).
-
B.
survival motor neuron protein
Survival motor neuron protein is an essential cellular protein required for the maintenance and function of motor neurons, whose deficiency leads to spinal muscular atrophy.
-
C.
C9orf72
C9orf72 is a human gene whose hexanucleotide repeat expansions are the most common known genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
-
D.
SMN2
SMN2 is a human gene that produces a backup form of survival motor neuron protein and is a key therapeutic target in spinal muscular atrophy.
-
E.
ALS
ALS (amyotrophic lateral sclerosis) is a progressive neurodegenerative disease that affects nerve cells in the brain and spinal cord, leading to muscle weakness, paralysis, and ultimately respiratory failure.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: hasGeneProduct Context triple: [SOD1, hasGeneProduct, SOD1 protein]
-
A.
hasProduct
chosen
Indicates that an entity possesses, offers, or is associated with a particular product.
-
B.
targetsGene
Indicates that one entity is directed toward, acts upon, or is intended to affect a specific gene.
-
C.
hasProteinBinding
Indicates that one entity is capable of physically binding to or interacting specifically with a protein.
-
D.
hasProduction
Indicates that an entity is associated with, or responsible for, the creation or manufacture of another entity or product.
-
E.
hasPlasmid
Indicates that one entity possesses or contains a plasmid associated with it.
- F. None of above.
Provenance (4 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69c00872444c8190bfaf1739dcec765c |
completed | March 22, 2026, 3:19 p.m. |
| NER | Named-entity recognition | batch_69c04f10d18081908c351170b7f58d3d |
completed | March 22, 2026, 8:20 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69c1088f5c84819094e4696c24c4dd79 |
completed | March 23, 2026, 9:31 a.m. |
| PD | Predicate disambiguation | batch_69c049e3316c819087ea635fa7ee8472 |
completed | March 22, 2026, 7:58 p.m. |
Created at: March 22, 2026, 4:06 p.m.