Triple

T6004838
Position Surface form Disambiguated ID Type / Status
Subject C9orf72 E133683 entity
Predicate HGNCID P65649 FINISHED
Object HGNC:28350
HGNC:28350 is the HGNC gene identifier assigned to the human C9orf72 gene, which is notably associated with familial amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
E561104 NE FINISHED

How this triple was built (5 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: HGNC:28350 | Statement: [C9orf72, HGNCID, HGNC:28350]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: HGNC:28350
Context triple: [C9orf72, HGNCID, HGNC:28350]
  • A. ERBB2
    ERBB2, also known as HER2, is a receptor tyrosine kinase frequently overexpressed in certain breast and other cancers and serves as a key therapeutic target.
  • B. Gene
    Gene is the given name of No Malice, the American rapper best known as one half of the hip hop duo Clipse.
  • C. HGF
    HGF is the abbreviation for the Helmholtz Association, Germany’s largest scientific research organization spanning multiple disciplines and large-scale facilities.
  • D. HGF
    HGF is the National Rail station code for Hag Fold railway station in Greater Manchester, England.
  • E. HBG
    HBG was a major Dutch construction and civil engineering company known for large-scale infrastructure and building projects in the Netherlands and abroad.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: HGNC:28350
Triple: [C9orf72, HGNCID, HGNC:28350]
Generated description
HGNC:28350 is the HGNC gene identifier assigned to the human C9orf72 gene, which is notably associated with familial amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: HGNC:28350
Target entity description: HGNC:28350 is the HGNC gene identifier assigned to the human C9orf72 gene, which is notably associated with familial amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
  • A. ERBB2
    ERBB2, also known as HER2, is a receptor tyrosine kinase frequently overexpressed in certain breast and other cancers and serves as a key therapeutic target.
  • B. Gene
    Gene is the given name of No Malice, the American rapper best known as one half of the hip hop duo Clipse.
  • C. HGF
    HGF is the abbreviation for the Helmholtz Association, Germany’s largest scientific research organization spanning multiple disciplines and large-scale facilities.
  • D. HGF
    HGF is the National Rail station code for Hag Fold railway station in Greater Manchester, England.
  • E. HBG
    HBG was a major Dutch construction and civil engineering company known for large-scale infrastructure and building projects in the Netherlands and abroad.
  • F. None of above. chosen
PD Predicate disambiguation gpt-5-mini-2025-08-07
Target predicate: HGNCID
Context triple: [C9orf72, HGNCID, HGNC:28350]
  • A. targetsGene
    Indicates that one entity is directed toward, acts upon, or is intended to affect a specific gene.
  • B. GNDID
    Indicates a standardized authority identifier linking an entity to its unique record in the Gemeinsame Normdatei (GND) authority file.
  • C. ontologyId chosen
    Indicates that there is an association between an entity and a specific ontology identifier that formally defines or classifies it within an ontology.
  • D. genomeCharacteristic
    Indicates that an entity has a specific property, feature, or attribute related to its genome.
  • E. geneticStatus
    Indicates the genetic condition or variant state an entity has in relation to a specific gene or set of genes.
  • F. None of above.

Provenance (6 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69c00872444c8190bfaf1739dcec765c completed March 22, 2026, 3:19 p.m.
NER Named-entity recognition batch_69c04f10d18081908c351170b7f58d3d completed March 22, 2026, 8:20 p.m.
NED1 Entity disambiguation (via context triple) batch_69c1088f5c84819094e4696c24c4dd79 completed March 23, 2026, 9:31 a.m.
NEDg Description generation batch_69c1099f00f88190a5f1f0fafbb679c2 completed March 23, 2026, 9:36 a.m.
NED2 Entity disambiguation (via description) batch_69c10a2ffdcc8190bfeebc59d98b2b29 completed March 23, 2026, 9:38 a.m.
PD Predicate disambiguation batch_69c049e3316c819087ea635fa7ee8472 completed March 22, 2026, 7:58 p.m.
Created at: March 22, 2026, 4:06 p.m.