Triple
T6004838
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | C9orf72 |
E133683
|
entity |
| Predicate | HGNCID |
P65649
|
FINISHED |
| Object |
HGNC:28350
HGNC:28350 is the HGNC gene identifier assigned to the human C9orf72 gene, which is notably associated with familial amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
|
E561104
|
NE FINISHED |
How this triple was built (5 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: HGNC:28350 | Statement: [C9orf72, HGNCID, HGNC:28350]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: HGNC:28350 Context triple: [C9orf72, HGNCID, HGNC:28350]
-
A.
ERBB2
ERBB2, also known as HER2, is a receptor tyrosine kinase frequently overexpressed in certain breast and other cancers and serves as a key therapeutic target.
-
B.
Gene
Gene is the given name of No Malice, the American rapper best known as one half of the hip hop duo Clipse.
-
C.
HGF
HGF is the abbreviation for the Helmholtz Association, Germany’s largest scientific research organization spanning multiple disciplines and large-scale facilities.
-
D.
HGF
HGF is the National Rail station code for Hag Fold railway station in Greater Manchester, England.
-
E.
HBG
HBG was a major Dutch construction and civil engineering company known for large-scale infrastructure and building projects in the Netherlands and abroad.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: HGNC:28350 Triple: [C9orf72, HGNCID, HGNC:28350]
Generated description
HGNC:28350 is the HGNC gene identifier assigned to the human C9orf72 gene, which is notably associated with familial amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: HGNC:28350 Target entity description: HGNC:28350 is the HGNC gene identifier assigned to the human C9orf72 gene, which is notably associated with familial amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
-
A.
ERBB2
ERBB2, also known as HER2, is a receptor tyrosine kinase frequently overexpressed in certain breast and other cancers and serves as a key therapeutic target.
-
B.
Gene
Gene is the given name of No Malice, the American rapper best known as one half of the hip hop duo Clipse.
-
C.
HGF
HGF is the abbreviation for the Helmholtz Association, Germany’s largest scientific research organization spanning multiple disciplines and large-scale facilities.
-
D.
HGF
HGF is the National Rail station code for Hag Fold railway station in Greater Manchester, England.
-
E.
HBG
HBG was a major Dutch construction and civil engineering company known for large-scale infrastructure and building projects in the Netherlands and abroad.
- F. None of above. chosen
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: HGNCID Context triple: [C9orf72, HGNCID, HGNC:28350]
-
A.
targetsGene
Indicates that one entity is directed toward, acts upon, or is intended to affect a specific gene.
-
B.
GNDID
Indicates a standardized authority identifier linking an entity to its unique record in the Gemeinsame Normdatei (GND) authority file.
-
C.
ontologyId
chosen
Indicates that there is an association between an entity and a specific ontology identifier that formally defines or classifies it within an ontology.
-
D.
genomeCharacteristic
Indicates that an entity has a specific property, feature, or attribute related to its genome.
-
E.
geneticStatus
Indicates the genetic condition or variant state an entity has in relation to a specific gene or set of genes.
- F. None of above.
Provenance (6 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69c00872444c8190bfaf1739dcec765c |
completed | March 22, 2026, 3:19 p.m. |
| NER | Named-entity recognition | batch_69c04f10d18081908c351170b7f58d3d |
completed | March 22, 2026, 8:20 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69c1088f5c84819094e4696c24c4dd79 |
completed | March 23, 2026, 9:31 a.m. |
| NEDg | Description generation | batch_69c1099f00f88190a5f1f0fafbb679c2 |
completed | March 23, 2026, 9:36 a.m. |
| NED2 | Entity disambiguation (via description) | batch_69c10a2ffdcc8190bfeebc59d98b2b29 |
completed | March 23, 2026, 9:38 a.m. |
| PD | Predicate disambiguation | batch_69c049e3316c819087ea635fa7ee8472 |
completed | March 22, 2026, 7:58 p.m. |
Created at: March 22, 2026, 4:06 p.m.