Triple

T4850595
Position Surface form Disambiguated ID Type / Status
Subject Cambridge Crystallographic Data Centre E108403 entity
Predicate collaboratesWith P37 FINISHED
Object Protein Data Bank E200553 NE FINISHED

How this triple was built (2 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Protein Data Bank | Statement: [Cambridge Crystallographic Data Centre, collaboratesWith, Protein Data Bank]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: Protein Data Bank
Context triple: [Cambridge Crystallographic Data Centre, collaboratesWith, Protein Data Bank]
  • A. Protein Data Bank chosen
    The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.
  • B. EMBL-EBI AlphaFold Protein Structure Database
    The EMBL-EBI AlphaFold Protein Structure Database is a publicly accessible resource providing predicted 3D structures of proteins generated by DeepMind’s AlphaFold system.
  • C. Cambridge Crystallographic Data Centre
    The Cambridge Crystallographic Data Centre is a leading research organization that curates and distributes the world’s primary database of small-molecule organic and metal-organic crystal structures for the scientific community.
  • D. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • E. pdb
    pdb is Python’s built-in interactive debugger, used to inspect and control the execution of Python programs for troubleshooting and development.
  • F. None of above.
  • G. Unsure - the case is ambiguous/there is not enough information to decide.

Provenance (3 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69bd440a89548190a5f14ba6da6b97dc completed March 20, 2026, 12:56 p.m.
NER Named-entity recognition batch_69bd6d1ffad48190bec7be4a3b5ebb9c completed March 20, 2026, 3:52 p.m.
NED1 Entity disambiguation (via context triple) batch_69be5cdefda8819095fbc04446bf32f5 completed March 21, 2026, 8:54 a.m.
Created at: March 20, 2026, 1:25 p.m.