Triple
T4248064
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Onchocerca volvulus |
E95575
|
entity |
| Predicate | wolbachiaEndosymbiont |
P49176
|
FINISHED |
| Object |
Wolbachia bacteria
Wolbachia bacteria are intracellular, maternally inherited bacteria that infect a wide range of arthropods and some nematodes, often manipulating host reproduction and serving as essential symbionts in certain parasitic worms.
|
E425041
|
NE FINISHED |
How this triple was built (5 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Wolbachia bacteria | Statement: [Onchocerca volvulus, wolbachiaEndosymbiont, Wolbachia bacteria]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Wolbachia bacteria Context triple: [Onchocerca volvulus, wolbachiaEndosymbiont, Wolbachia bacteria]
-
A.
Yersinia pestis
Yersinia pestis is a highly virulent bacterium responsible for plague, including the historic pandemics of bubonic, septicemic, and pneumonic forms.
-
B.
Wuchereria bancrofti
Wuchereria bancrofti is a parasitic filarial nematode that infects the human lymphatic system and is the primary cause of lymphatic filariasis (elephantiasis) worldwide.
-
C.
Caenorhabditis
Caenorhabditis is a genus of small, free-living nematode worms widely used as model organisms in biological and genetic research.
-
D.
Solenopsis invicta virus 1
Solenopsis invicta virus 1 is a pathogenic virus that infects red imported fire ants and is studied as a potential biological control agent to help manage their invasive populations.
-
E.
Yersinia
Yersinia is a genus of Gram-negative bacteria that includes several pathogenic species, most notably Yersinia pestis, the causative agent of plague.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Wolbachia bacteria Triple: [Onchocerca volvulus, wolbachiaEndosymbiont, Wolbachia bacteria]
Generated description
Wolbachia bacteria are intracellular, maternally inherited bacteria that infect a wide range of arthropods and some nematodes, often manipulating host reproduction and serving as essential symbionts in certain parasitic worms.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Wolbachia bacteria Target entity description: Wolbachia bacteria are intracellular, maternally inherited bacteria that infect a wide range of arthropods and some nematodes, often manipulating host reproduction and serving as essential symbionts in certain parasitic worms.
-
A.
Yersinia pestis
Yersinia pestis is a highly virulent bacterium responsible for plague, including the historic pandemics of bubonic, septicemic, and pneumonic forms.
-
B.
Wuchereria bancrofti
Wuchereria bancrofti is a parasitic filarial nematode that infects the human lymphatic system and is the primary cause of lymphatic filariasis (elephantiasis) worldwide.
-
C.
Caenorhabditis
Caenorhabditis is a genus of small, free-living nematode worms widely used as model organisms in biological and genetic research.
-
D.
Solenopsis invicta virus 1
Solenopsis invicta virus 1 is a pathogenic virus that infects red imported fire ants and is studied as a potential biological control agent to help manage their invasive populations.
-
E.
Yersinia
Yersinia is a genus of Gram-negative bacteria that includes several pathogenic species, most notably Yersinia pestis, the causative agent of plague.
- F. None of above. chosen
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: wolbachiaEndosymbiont Context triple: [Onchocerca volvulus, wolbachiaEndosymbiont, Wolbachia bacteria]
-
A.
symbiontType
Indicates the specific kind or category of symbiotic relationship that exists between associated organisms.
-
B.
isPathogenOf
Indicates that one entity is a disease-causing agent (pathogen) that infects or causes illness in another entity.
-
C.
bacteriumIdentifiedIn
chosen
Indicates that a specific bacterium has been detected, recognized, or confirmed as present in a particular sample, environment, or host.
-
D.
parasitizes
Indicates a relationship in which one organism lives on or in another organism, deriving nutrients or benefits at the host’s expense.
-
E.
containsSymbioticAssociationsWith
Indicates that one entity includes or encompasses another entity with which it maintains a symbiotic (mutually dependent or beneficial) biological relationship.
- F. None of above.
Provenance (6 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69b3453d91548190b4d4ef8fe52aa2ac |
completed | March 12, 2026, 10:59 p.m. |
| NER | Named-entity recognition | batch_69b34e9cb71481909b4baa370193148f |
completed | March 12, 2026, 11:39 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69b5a87c033881908e0cf9fdfecaf36a |
completed | March 14, 2026, 6:27 p.m. |
| NEDg | Description generation | batch_69b5a925b8e881908338dc0620b18734 |
completed | March 14, 2026, 6:29 p.m. |
| NED2 | Entity disambiguation (via description) | batch_69b5ad224c848190b1ce76d61fc1d564 |
completed | March 14, 2026, 6:46 p.m. |
| PD | Predicate disambiguation | batch_69b347f73e008190a908a48ef389945a |
completed | March 12, 2026, 11:10 p.m. |
Created at: March 12, 2026, 11:06 p.m.