Triple

T4248064
Position Surface form Disambiguated ID Type / Status
Subject Onchocerca volvulus E95575 entity
Predicate wolbachiaEndosymbiont P49176 FINISHED
Object Wolbachia bacteria
Wolbachia bacteria are intracellular, maternally inherited bacteria that infect a wide range of arthropods and some nematodes, often manipulating host reproduction and serving as essential symbionts in certain parasitic worms.
E425041 NE FINISHED

How this triple was built (5 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Wolbachia bacteria | Statement: [Onchocerca volvulus, wolbachiaEndosymbiont, Wolbachia bacteria]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: Wolbachia bacteria
Context triple: [Onchocerca volvulus, wolbachiaEndosymbiont, Wolbachia bacteria]
  • A. Yersinia pestis
    Yersinia pestis is a highly virulent bacterium responsible for plague, including the historic pandemics of bubonic, septicemic, and pneumonic forms.
  • B. Wuchereria bancrofti
    Wuchereria bancrofti is a parasitic filarial nematode that infects the human lymphatic system and is the primary cause of lymphatic filariasis (elephantiasis) worldwide.
  • C. Caenorhabditis
    Caenorhabditis is a genus of small, free-living nematode worms widely used as model organisms in biological and genetic research.
  • D. Solenopsis invicta virus 1
    Solenopsis invicta virus 1 is a pathogenic virus that infects red imported fire ants and is studied as a potential biological control agent to help manage their invasive populations.
  • E. Yersinia
    Yersinia is a genus of Gram-negative bacteria that includes several pathogenic species, most notably Yersinia pestis, the causative agent of plague.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Wolbachia bacteria
Triple: [Onchocerca volvulus, wolbachiaEndosymbiont, Wolbachia bacteria]
Generated description
Wolbachia bacteria are intracellular, maternally inherited bacteria that infect a wide range of arthropods and some nematodes, often manipulating host reproduction and serving as essential symbionts in certain parasitic worms.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: Wolbachia bacteria
Target entity description: Wolbachia bacteria are intracellular, maternally inherited bacteria that infect a wide range of arthropods and some nematodes, often manipulating host reproduction and serving as essential symbionts in certain parasitic worms.
  • A. Yersinia pestis
    Yersinia pestis is a highly virulent bacterium responsible for plague, including the historic pandemics of bubonic, septicemic, and pneumonic forms.
  • B. Wuchereria bancrofti
    Wuchereria bancrofti is a parasitic filarial nematode that infects the human lymphatic system and is the primary cause of lymphatic filariasis (elephantiasis) worldwide.
  • C. Caenorhabditis
    Caenorhabditis is a genus of small, free-living nematode worms widely used as model organisms in biological and genetic research.
  • D. Solenopsis invicta virus 1
    Solenopsis invicta virus 1 is a pathogenic virus that infects red imported fire ants and is studied as a potential biological control agent to help manage their invasive populations.
  • E. Yersinia
    Yersinia is a genus of Gram-negative bacteria that includes several pathogenic species, most notably Yersinia pestis, the causative agent of plague.
  • F. None of above. chosen
PD Predicate disambiguation gpt-5-mini-2025-08-07
Target predicate: wolbachiaEndosymbiont
Context triple: [Onchocerca volvulus, wolbachiaEndosymbiont, Wolbachia bacteria]
  • A. symbiontType
    Indicates the specific kind or category of symbiotic relationship that exists between associated organisms.
  • B. isPathogenOf
    Indicates that one entity is a disease-causing agent (pathogen) that infects or causes illness in another entity.
  • C. bacteriumIdentifiedIn chosen
    Indicates that a specific bacterium has been detected, recognized, or confirmed as present in a particular sample, environment, or host.
  • D. parasitizes
    Indicates a relationship in which one organism lives on or in another organism, deriving nutrients or benefits at the host’s expense.
  • E. containsSymbioticAssociationsWith
    Indicates that one entity includes or encompasses another entity with which it maintains a symbiotic (mutually dependent or beneficial) biological relationship.
  • F. None of above.

Provenance (6 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69b3453d91548190b4d4ef8fe52aa2ac completed March 12, 2026, 10:59 p.m.
NER Named-entity recognition batch_69b34e9cb71481909b4baa370193148f completed March 12, 2026, 11:39 p.m.
NED1 Entity disambiguation (via context triple) batch_69b5a87c033881908e0cf9fdfecaf36a completed March 14, 2026, 6:27 p.m.
NEDg Description generation batch_69b5a925b8e881908338dc0620b18734 completed March 14, 2026, 6:29 p.m.
NED2 Entity disambiguation (via description) batch_69b5ad224c848190b1ce76d61fc1d564 completed March 14, 2026, 6:46 p.m.
PD Predicate disambiguation batch_69b347f73e008190a908a48ef389945a completed March 12, 2026, 11:10 p.m.
Created at: March 12, 2026, 11:06 p.m.