Triple
T4231872
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Brassicaceae |
E94597
|
entity |
| Predicate | modelOrganism |
P32525
|
FINISHED |
| Object | Arabidopsis thaliana |
E91554
|
NE FINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Arabidopsis thaliana | Statement: [Brassicaceae, modelOrganism, Arabidopsis thaliana]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Arabidopsis thaliana Context triple: [Brassicaceae, modelOrganism, Arabidopsis thaliana]
-
A.
Arabidopsis thaliana
chosen
Arabidopsis thaliana is a small flowering plant in the mustard family widely used as a model organism in plant biology and genetics.
-
B.
Arabidopsis
Arabidopsis is a genus of small flowering plants in the mustard family that includes several species widely used as model organisms in plant biology and genetics.
-
C.
Medicago
Medicago is a genus of leguminous plants best known for species like alfalfa, which are widely cultivated as high-protein forage crops and for soil improvement through nitrogen fixation.
-
D.
Pisum
Pisum is a small genus of flowering legume plants best known for the garden pea, a key model organism in genetics and an important food crop.
-
E.
Glycine max
Glycine max is the cultivated soybean plant, a major legume crop grown worldwide for its protein- and oil-rich seeds used in food, feed, and industrial products.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: modelOrganism Context triple: [Brassicaceae, modelOrganism, Arabidopsis thaliana]
-
A.
isModelOrganism
chosen
Indicates that one organism is used as a representative experimental system for studying biological processes relevant to other organisms.
-
B.
notableModelOrganism
Indicates that an organism is widely recognized and frequently used as a standard or reference model for scientific research or experimentation.
-
C.
studiedOrganism
Indicates that an entity conducted study or research on a particular organism.
-
D.
containsModelOrganisms
Indicates that one entity includes or incorporates model organisms as part of its contents or composition.
-
E.
organismType
Indicates the biological classification or kind of organism that an entity is.
- F. None of above.
Provenance (4 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69b34537cc6481909cd0a96acbb33ef7 |
completed | March 12, 2026, 10:59 p.m. |
| NER | Named-entity recognition | batch_69b34e642aac8190977dd101e27afcbb |
completed | March 12, 2026, 11:38 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69b5a85fdbe08190bcdc18a4bc456b59 |
completed | March 14, 2026, 6:26 p.m. |
| PD | Predicate disambiguation | batch_69b347f3bd188190b0cd613e8a5c1683 |
completed | March 12, 2026, 11:10 p.m. |
Created at: March 12, 2026, 11:05 p.m.